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9e408b2
FAIMS support and quant in FFID
Feb 1, 2023
2ef6470
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Feb 9, 2023
78114e3
add timsTOF IM support
Feb 9, 2023
372bc73
support SVR in SimpleSVM
timosachsenberg Feb 10, 2023
03493d5
added test for regression
timosachsenberg Feb 10, 2023
c4630b9
update doc
timosachsenberg Feb 10, 2023
18eda83
Merge remote-tracking branch 'origin/feature_SVR' into feature/NuXL
Feb 13, 2023
c83876b
inital support for RT prediction
Feb 14, 2023
5c1421f
RT prediction of XLed peptides
Feb 15, 2023
a891f4d
update SimpleSVM
Feb 16, 2023
5e59ebf
expand SVR
Feb 21, 2023
f5822af
finished simple SVR
Feb 21, 2023
a9a7f23
also annotate ions for non-cross-linked peptides
Mar 16, 2023
69caead
moved annotation and location of linear peptides into function
Mar 17, 2023
268a96c
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Apr 19, 2023
651a512
merge to develop fixes
Apr 19, 2023
72dcc23
fixed order bug (doesn't change results)
Apr 25, 2023
6c4ebe4
good, relatively small feature set for svm based rescoring
Apr 26, 2023
b7851e7
add DNA BrU preset
May 10, 2023
8d53e93
some safeguard for empty spectra after precursor filtering
May 23, 2023
c125f01
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Jul 12, 2023
091335c
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Aug 8, 2023
cd5a8dc
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Aug 10, 2023
475884a
merge
Aug 10, 2023
d8a9f9b
add sequence level q-value to protein report
Aug 11, 2023
1df8f2f
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Oct 17, 2023
46455ce
Update executables.cmake
timosachsenberg Oct 18, 2023
93b21a1
add nuxl
Oct 18, 2023
d0145c8
Update executables.cmake
Arslan-Siraj Oct 18, 2023
7dadb7e
sort executables by name
timosachsenberg Oct 18, 2023
a471478
Merge pull request #7141 from Arslan-Siraj/feature/NuXL
timosachsenberg Oct 18, 2023
b194159
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Nov 14, 2023
cf96f2f
update executables
Nov 14, 2023
a796c54
update branch
Nov 14, 2023
855123d
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Nov 29, 2023
9849f01
Merge remote-tracking branch 'origin/develop' into feature/NuXL
Nov 30, 2023
d532e68
update license text
Dec 5, 2023
19a7660
Merge remote-tracking branch 'origin/develop' into feature/NuXL
timosachsenberg Jan 30, 2024
8cff101
Merge remote-tracking branch 'origin/develop' into feature/NuXL
timosachsenberg Jan 30, 2024
bb9e64d
fix warning
timosachsenberg Jan 30, 2024
f9994e2
readded missing topp tools
timosachsenberg Jan 30, 2024
97b5c01
should be all now
timosachsenberg Jan 30, 2024
1e09116
fix doc errors
timosachsenberg Jan 30, 2024
82f3ba3
Merge pull request #7343 from OpenMS/develop
timosachsenberg Feb 8, 2024
374ec31
add NM + H2O
timosachsenberg Nov 25, 2024
ed4447c
fix preset
Nov 26, 2024
1fdcb97
resolve merge conflicts
timosachsenberg Jan 21, 2025
3e2b0a9
more path changes
timosachsenberg Jan 21, 2025
eaeaaff
last paths
timosachsenberg Jan 21, 2025
b18695f
fix some tests
timosachsenberg Jan 21, 2025
249a10b
more tests
timosachsenberg Jan 21, 2025
141f415
more tests
timosachsenberg Jan 21, 2025
29ecf9a
nop
timosachsenberg Jan 21, 2025
854fa10
fix more annotation tests
timosachsenberg Jan 21, 2025
5a5721c
added some debug code that shows an issue with the check for amidatio…
timosachsenberg Jan 21, 2025
3b023e7
update DecoyGenerator test
timosachsenberg Jan 22, 2025
4abd5d9
update nuXL tests
timosachsenberg Jan 22, 2025
b9c523e
factor special functionality of NuXLDeisotoper out
timosachsenberg Jan 22, 2025
901991d
fix SSE test
timosachsenberg Jan 22, 2025
9782985
remove feature augmentation
timosachsenberg Jan 22, 2025
29707c7
remove some unused functionality
timosachsenberg Jan 22, 2025
b9b9091
Apply suggestions from code review
timosachsenberg Jan 22, 2025
05f7646
add missing include
timosachsenberg Jan 22, 2025
eb57669
Merge remote-tracking branch 'origin/feature/NuXL' into feature/NuXL
timosachsenberg Jan 22, 2025
877f200
missing test files
timosachsenberg Jan 22, 2025
a413358
partial loss score still different
timosachsenberg Jan 22, 2025
0830d4e
partial loss score still different
timosachsenberg Jan 22, 2025
5068ef3
Merge remote-tracking branch 'origin/feature/NuXL' into feature/NuXL
timosachsenberg Jan 22, 2025
7ab5ee2
removed some compile warnings
timosachsenberg Jan 22, 2025
cb49f31
more consistent ion charge format
timosachsenberg Jan 23, 2025
c2e9fd7
remove annotation of internal ions (to many duplicated m/z)
timosachsenberg Jan 23, 2025
51ade5b
increase determinism
timosachsenberg Jan 23, 2025
74deac8
stupid windows
timosachsenberg Jan 23, 2025
ee92601
Merge remote-tracking branch 'origin/develop' into feature/NuXL
timosachsenberg Jan 23, 2025
0177dcd
add tests and documentation for deterministic fragment adduct generation
timosachsenberg Jan 24, 2025
652ef46
Merge branch 'develop' into feature/NuXL
timosachsenberg Jan 31, 2025
0d4586f
Add support for custom RNA/DNA presets in json file (#7856)
timosachsenberg Feb 25, 2025
73c4cd2
some additional documentation
timosachsenberg Mar 13, 2025
cefe623
remove some unused code
timosachsenberg Mar 13, 2025
a1c789b
first steps of auto IRT refinement: add way to subsample the library
jcharkow Apr 17, 2025
ccb12f5
feature: add automatic linear calibration
jcharkow Apr 18, 2025
300e999
add method to subsample LightTargetedExperiment based on peptide list
jcharkow Apr 30, 2025
4d5fa96
fix, refactor: subsampleLibrary across RT space
jcharkow Apr 30, 2025
5526f70
initial framework for auto irt detection with linear transformation
jcharkow Apr 30, 2025
9e369d9
progress: auto iRT
jcharkow Apr 30, 2025
8bec811
fix #8014: opening a single MS2 spec in 3D view should not be allowed…
cbielow May 5, 2025
5794c96
- avoid redrawing when filters are initially set while setting up a …
cbielow May 5, 2025
520c60b
Range exception (#8017)
timosachsenberg May 5, 2025
9cb64f2
Handled Single-Peak Mass Traces (#8011)
ZenMachina16 May 6, 2025
7f00f84
use pattern for download-artifact (#8009)
poshul May 6, 2025
d49ba5f
Add option to PeakFileOption to ignore loading (#7901) (#7902)
adityamuzumdar May 6, 2025
dc3df8d
Merge branch 'develop' into fix_TV3d
cbielow May 6, 2025
52f0323
added update ranges to other file formats (#8020)
timosachsenberg May 6, 2025
6265b30
Merge branch 'develop' into fix_TV3d
pjones May 7, 2025
8ea9b18
Merge pull request #8019 from cbielow/fix_TV3d
pjones May 7, 2025
a2aa416
Make sure classes that use rangeManager aren't empty during pyopenms …
poshul May 7, 2025
d51735c
[DOC] Be specific about Boost flags and improve formatting (#8023)
pjones May 7, 2025
b90462f
simplifies the Linux build instructions specifically for Ubuntu (#7897)
Krishnadubey1008 May 8, 2025
019a868
fix documentation inconsistency (#7971)
Son-0f-Anton May 8, 2025
8a6a4e2
Update install-linux.doxygen (#8027)
poshul May 8, 2025
2438a36
Update for Release 3.4 (#8028)
pjones May 8, 2025
c5a4f44
Updated OpenMS package version number (#8033)
github-actions[bot] May 9, 2025
11b90f0
Merge 3.4.0 into develop (#8037)
poshul May 9, 2025
c25b45f
TOPPAS: tutorial update (#8025)
cbielow May 12, 2025
d736772
refactor: reduce the use of assignRanks (#7991)
timosachsenberg May 12, 2025
809bfe8
Resolve undefined behavior w.r.t. basic_string<unsigned_char> (#8024)
pjones May 12, 2025
4f8e01d
refactor: peptide id - move rank to metavalue (#7997)
timosachsenberg May 13, 2025
fb3557d
Show file load/store progress in all TOPP tools (#8041)
cbielow May 14, 2025
e26fb11
Add doc (#8044)
timosachsenberg May 15, 2025
597aaf8
avoid "unknown pragma" warnings on MSVC (#8045)
cbielow May 15, 2025
e5c3cb2
refactor: FFIDmoves many of the external id related functionality in …
timosachsenberg May 15, 2025
4a57f59
Cleanup tags (#8036)
poshul May 15, 2025
970bfbe
TOPPView: fixes a few error messages boxes (im IM frames, and 2D proj…
cbielow May 15, 2025
36744db
refactor: separate ranges (#8021)
timosachsenberg May 16, 2025
dc7037f
Pjones/backports (#8051)
pjones May 16, 2025
f062df3
feature: add auto non linear irt correction
jcharkow May 16, 2025
bed0db7
fix: r^2 is zero (#8052)
jcharkow May 17, 2025
e88b120
Feat/option to toggle tdl (#8055)
SGSSGene May 20, 2025
d422420
Merge branch 'develop' of github.com:OpenMS/OpenMS into auto_irt
jcharkow May 20, 2025
8b30bf3
refactor: Store IDs outside of spectra. (#7974)
timosachsenberg May 21, 2025
e53497c
Fix_pms (#8063)
timosachsenberg May 22, 2025
35bd2c1
Update cibuild.cmake
timosachsenberg May 22, 2025
707a727
[DOC/CI] Make installation documentation and CI use the same commands
pjones May 13, 2025
e59c7eb
[DOC] Rewrite build instructions for macOS and Linux
pjones May 22, 2025
8190251
[DOC] Update based on review feedback
pjones May 23, 2025
7ab035b
[DOCS/CI] We don't need to pin Python to version 3.13
pjones May 23, 2025
98f4a9c
[DOC] Stick with Doxygen 1.9 Syntax
pjones May 23, 2025
9f916c2
update: adding SQLiteCpp version 3.3.3
SGSSGene May 21, 2025
2bf9f95
fix: adjust SQLiteCpp CMakeLists.txt
SGSSGene May 21, 2025
cca14b4
Merge pull request #8060 from SGSSGene/fix/update_sqlitecpp
timosachsenberg May 23, 2025
a454f24
Merge branch 'develop' into pjones/ci-install
timosachsenberg May 26, 2025
fabf538
Merge pull request #8042 from OpenMS/pjones/ci-install
timosachsenberg May 26, 2025
aaacefc
more fixes
timosachsenberg May 26, 2025
b4f6923
Merge pull request #8065 from OpenMS/fix_py
timosachsenberg May 26, 2025
09dcf6f
minor runtime improvement (5% for FileConverter) at almost no RAM cost
cbielow May 28, 2025
a1bb250
fix CHANGELOG (also for Release 3.4.1)
cbielow May 28, 2025
71a5cd0
fix compile errors
cbielow May 28, 2025
88d74e5
Update cibuild.cmake
timosachsenberg May 28, 2025
1122e30
Merge pull request #8071 from OpenMS/luciphor_pep
timosachsenberg May 28, 2025
65bbb51
use same String hasher across platforms to make result of unordered_m…
cbielow May 28, 2025
93b0f75
revert CV unordered_map. Not portable to MacOS, probably due to diffe…
cbielow May 29, 2025
c71ec96
speed improvement of reading of .gz files by ~7% by increasing buffer…
cbielow May 29, 2025
57d9b3a
avoid zlib include in header
cbielow May 29, 2025
ed94fdb
Merge branch 'develop' into cv_map
cbielow May 29, 2025
65c591c
feature: FileFilter can drop metadataarrays now
cbielow May 30, 2025
9a5bfce
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into mzml_…
cbielow May 30, 2025
89b095f
feature: faster merging of meta value instances
cbielow May 30, 2025
c9d6f7b
faster reading of mzML when additional binary data is present (~20%)
cbielow May 30, 2025
543db5d
faster reading of mzML when additional binary data is present (e.g. f…
cbielow May 30, 2025
844166a
adapt exception to match ParseError which occured previously when rea…
cbielow May 30, 2025
a80586e
Merge branch 'cv_map' of https://github.com/cbielow/OpenMS into cv_map
cbielow May 30, 2025
6a549b3
change behaviour of MetaInfo::operator+= (overwrite)
cbielow May 30, 2025
5850ca6
Merge pull request #8069 from cbielow/cv_map
cbielow Jun 2, 2025
e6aa2c1
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into mzml_…
cbielow Jun 2, 2025
24d5a1a
add tests; augment CHANGELOG
cbielow Jun 2, 2025
77b06af
Merge branch 'mzml_meta_read' of https://github.com/cbielow/OpenMS in…
cbielow Jun 2, 2025
b5f48ea
fix bilinear interpolation test: avoid randomly using an identical ma…
cbielow Jun 2, 2025
d8b8bad
[DOCKER] Don't use `git submodule` unless necessary
pjones Jun 2, 2025
a9f803b
build static sqlite libs on Windows
cbielow Jun 3, 2025
826296b
Merge branch 'develop' into mzml_meta_read
cbielow Jun 3, 2025
e40ecd8
Merge pull request #8079 from cbielow/fix_sql
cbielow Jun 3, 2025
6cfcff2
Merge branch 'develop' into mzml_meta_read
timosachsenberg Jun 3, 2025
4629d17
Merge pull request #8074 from cbielow/mzml_meta_read
cbielow Jun 3, 2025
c144a6e
Fix: correct marker ion deduplication by using 'equal_by_mass' compar…
Jun 4, 2025
d2c6ef7
Update src/openms/source/ANALYSIS/NUXL/NuXLParameterParsing.cpp
yumengyann Jun 5, 2025
6d8cbc4
Merge pull request #8080 from yumengyann/feature/NuXL
timosachsenberg Jun 5, 2025
dc0e52d
Merge branch 'develop' into feature/NuXL
timosachsenberg Jun 5, 2025
73130a8
Apply suggestions from code review
timosachsenberg Jun 5, 2025
748ee71
Update src/openms_gui/source/VISUAL/LayerDataBase.cpp
timosachsenberg Jun 5, 2025
4fe17f9
Update executables.cmake
timosachsenberg Jun 5, 2025
8227f81
fix cmake
Jun 6, 2025
3a47356
merge deveop
Jun 7, 2025
db84808
add constructor
Jun 7, 2025
6c3c7c1
fix bug
Jun 7, 2025
657cc08
fx counting if openmp disabled
Jun 7, 2025
0621c8f
fix test
timosachsenberg Jun 8, 2025
0fcb804
OpenSwath: add parameter to adjust non linear irt retention time extr…
jcharkow Jun 22, 2025
5508cf9
Merge remote-tracking branch 'origin' into feature/NuXL
timosachsenberg Jun 23, 2025
1329443
try atomic
timosachsenberg Jun 23, 2025
62bfa92
add more atomic
timosachsenberg Jun 24, 2025
fe85370
fix doxygen (#8088)
timosachsenberg Jun 24, 2025
e4b61fd
tie braker
timosachsenberg Jun 24, 2025
f279de7
changelog
timosachsenberg Jun 24, 2025
74ddc29
relax uniqueness
timosachsenberg Jun 24, 2025
5559f45
maybe fix test
timosachsenberg Jun 24, 2025
135c38f
lgamma seems to be faster (and maybe more portable)
timosachsenberg Jun 24, 2025
1595e08
make more deterministic
timosachsenberg Jun 25, 2025
ed7b3fa
Merge pull request #7815 from OpenMS/feature/NuXL
timosachsenberg Jun 25, 2025
0c9e6da
determinism on windows
timosachsenberg Jun 25, 2025
f1c2984
convert hmtl table to markdown (#8092)
timosachsenberg Jun 26, 2025
797bf70
Better peptide table in protein_quantifier output (#8094)
timosachsenberg Jun 30, 2025
42ade48
fix small bug and some refactoring (#8096)
timosachsenberg Jul 1, 2025
2b926eb
Update PeptideAndProteinQuant.cpp (#8097)
timosachsenberg Jul 1, 2025
01cd275
[GITHUB]: Add issue templates with forms
pjones Jul 3, 2025
16e128a
Arrow Integration + Test in CI (#8091)
Avni2000 Jul 7, 2025
8ef10aa
use SSE for toASCII conversion from UTF16; 10-30% mzML reading speed …
cbielow Jul 8, 2025
0887b28
compile fixes (MSVC)
cbielow Jul 8, 2025
82297e8
update CHANGELOG
cbielow Jul 8, 2025
c19206e
Update ARCHITECTURE.MD (#8108)
timosachsenberg Jul 9, 2025
368c48e
fix doc typo
cbielow Jul 9, 2025
6c726d7
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into simd_xml
cbielow Jul 9, 2025
f79c89f
[DOC]: Fix invalid method references
pjones Jul 9, 2025
18a4390
Merge pull request #8105 from cbielow/simd_xml
cbielow Jul 9, 2025
4c85484
Fix pyopenms (#8106)
poshul Jul 10, 2025
390cad8
Ignore SpectrumAccessTransforming again (#8113)
jpfeuffer Jul 10, 2025
da340bb
Feature nase staticmods (#8114)
poshul Jul 10, 2025
615255c
proper data array comparisons (#8112)
timosachsenberg Jul 11, 2025
62b6da5
refactor: Introduce class for a list of PeptideIdentification (#8109)
timosachsenberg Jul 11, 2025
bd1c61f
Revert "Ignore SpectrumAccessTransforming again (#8113)" (#8115)
timosachsenberg Jul 11, 2025
e115d73
fix vcpkg
jpfeuffer Jul 13, 2025
b077a10
also fix pyopenms
jpfeuffer Jul 13, 2025
cec672b
Merge pull request #8121 from jpfeuffer/fix/vcpkg
timosachsenberg Jul 14, 2025
91c4eb9
fix TOPPAS crash when using TOPP tools with multiple output formats (…
cbielow Jul 14, 2025
60cd3f8
Fix wrap ignore jawn (#8119)
poshul Jul 15, 2025
092ba54
try fix diascore with safer code and debug output. also fix ASAN
jpfeuffer Jul 15, 2025
d871520
use better dotproduct
jpfeuffer Jul 15, 2025
0636793
revert asan fix and ignore instead
jpfeuffer Jul 15, 2025
a80eb76
use Eigen
jpfeuffer Jul 16, 2025
608407c
link?
jpfeuffer Jul 16, 2025
a4de8b6
fix add_library_macros
jpfeuffer Jul 16, 2025
a2902c6
fix FATAL_WARNING
jpfeuffer Jul 16, 2025
fe530d0
refactor to cpp
jpfeuffer Jul 16, 2025
b775a37
use const iter
jpfeuffer Jul 16, 2025
e8b0339
revert no_asan at variable
jpfeuffer Jul 16, 2025
593ff9d
Add method handling semi-specific digestion to EnzymaticDigestion and…
Jul 17, 2025
6b7e131
ignore doxygen warning
timosachsenberg Jul 17, 2025
f21f17a
Updated/added authors section to some files
Jul 18, 2025
b1231fc
Merge branch 'develop' of github.com:OpenMS/OpenMS into Semi-specific…
Jul 18, 2025
086c3b5
Update CHANGELOG.
Jul 18, 2025
e29d837
[TEST]: Run pyOpenMS tests on Ubuntu
pjones Jul 9, 2025
36fdbbf
Applied suggestions from PR review (#8130).
Jul 18, 2025
fcdc7f2
Merge branch 'develop' of github.com:OpenMS/OpenMS into Semi-specific…
Jul 18, 2025
d3131af
remove debug stmts
jpfeuffer Jul 19, 2025
50e5e77
Merge pull request #8123 from jpfeuffer/fix/diascore
jpfeuffer Jul 19, 2025
649f20e
disable on windows (#8131)
timosachsenberg Jul 20, 2025
7b727ee
Added missing import to PyOpenMS test;
Jul 21, 2025
086ea83
Merge branch 'develop' of github.com:OpenMS/OpenMS into Semi-specific…
Jul 21, 2025
7601ad9
Typos; Code readability and correcting unrecommended use of boolean c…
Jul 21, 2025
2960dc6
`test_ProteaseDigestion.py`: corrected minor error, use Python's oper…
Jul 21, 2025
f768e94
CHANGELOG wording; check whether input is sorted in semiSpecificDiges…
Jul 21, 2025
ee62177
Fix failing pyOpenMS test.
Jul 21, 2025
b886c44
Merge pull request #8130 from Jeremi-Maciejewski/Semi-specific_digestion
cbielow Jul 22, 2025
48a37ac
Tweaks for FileInfo on FASTA files (#8135)
cbielow Jul 28, 2025
f388f97
grab thirdparty exes recursively rather than HARDCODING THEM
poshul Jul 31, 2025
dc4249d
fix docs for IDMapper::annotate() (#8141)
cbielow Aug 1, 2025
e74d323
Integrated Arrow and added README notes to docker folder (#8145)
Avni2000 Aug 1, 2025
243f957
Update MassTraceDetection.cpp (#8148)
timosachsenberg Aug 3, 2025
e8a315d
Unify isotope distributions (coarse vs. fine) (#8099)
cbielow Aug 4, 2025
2a8164a
modify MassTraceDetector and ElutionPeakDetection to be ion mobility …
alhigaylan Aug 4, 2025
55182d8
Merge branch 'OpenMS:develop' into auto_irt
jcharkow Aug 4, 2025
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58 changes: 58 additions & 0 deletions .github/ISSUE_TEMPLATE/01-question.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,58 @@
name: Request for Help
description: Ask a question or request support
labels:
- question
body:
- type: markdown
attributes:
value: |
<br>
- type: markdown
attributes:
value: "## Please Read Before Continuing"
- type: markdown
attributes:
value: |
Before opening an issue *please* consider using the following options instead:

* [Search existing issues](/OpenMS/OpenMS/issues) for similar requests.
* Start a [new discussion](/OpenMS/OpenMS/discussions/categories/q-a) in the Q&A section.

Thank you!

<br>
- type: markdown
attributes:
value: "## Details About Your Environment"
- type: input
id: os
attributes:
label: Operating System and Hardware
description: What operating system are you using? Which version? On what hardware?
placeholder: "Example: Windows 11 on x86"
validations:
required: true
- type: input
id: version
attributes:
label: OpenMS Version
description: Which version and distribution of OpenMS are you using?
placeholder: "Example: pyOpenMS 3.4"
validations:
required: true
- type: markdown
attributes:
value: |
<br>
- type: markdown
attributes:
value: "## Describe Your Request"
- type: textarea
id: description
attributes:
label: Your Question
description: |
Please provide a detailed question along with any information
you think we would need to help you.
validations:
required: true
69 changes: 69 additions & 0 deletions .github/ISSUE_TEMPLATE/02-bug-report.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,69 @@
name: Bug Report
description: Create a report to help us improve OpenMS
labels:
- bug
body:
- type: markdown
attributes:
value: |
<br>
- type: markdown
attributes:
value: "## Details About Your Environment"
- type: input
id: os
attributes:
label: Operating System and Hardware
description: What operating system are you using? Which version? On what hardware?
placeholder: "Example: Windows 11 on x86"
validations:
required: true
- type: input
id: version
attributes:
label: OpenMS Version
description: Which version and distribution of OpenMS are you using?
placeholder: "Example: pyOpenMS 3.4"
validations:
required: true
- type: dropdown
id: installer
attributes:
label: Installation Method
description: How did you install OpenMS?
options:
- "Official Installer"
- "Docker"
- "Python: Conda"
- "Python: Bioconda"
- "Python: pip"
- "Linux Package"
- "Other"
validations:
required: true
- type: markdown
attributes:
value: |
<br>
- type: markdown
attributes:
value: "## Describe the Bug"
- type: markdown
attributes:
value: |
When describing the problem you are experiencing please provide as much information as possible, including:

* What triggered the bug?
* The full text of any error message.
* Output from the tool you were using.
* Screenshots of misbehaving GUI tools.
* Example source code for problems with pyOpenMS.

Thank you!
- type: textarea
id: description
attributes:
label: Bug Description
description: Please describe the problem you are experiencing.
validations:
required: true
12 changes: 12 additions & 0 deletions .github/ISSUE_TEMPLATE/03-feature-request.yml
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name: Feature Request
description: Suggest an idea for this project
labels:
- enhancement
body:
- type: textarea
id: enhancement
attributes:
label: Enhancement Description
description: Please describe the feature you would like added to OpenMS.
validations:
required: true
13 changes: 13 additions & 0 deletions .github/ISSUE_TEMPLATE/04-maintainer.yml
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name: OpenMS Maintainer Report
description: A way for OpenMS core team members to submit reports.
body:
- type: markdown
attributes:
value: |
**NOTE:** This form is for OpenMS maintainers and core team members. If you want to file a bug report or request help please use [another form](/OpenMS/OpenMS/issues/new) instead.
- type: textarea
id: report
attributes:
label: Report
validations:
required: true
1 change: 1 addition & 0 deletions .github/ISSUE_TEMPLATE/config.yml
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blank_issues_enabled: false
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