Add pre-commit in github workflows. Cleanup pyproject and guidelines.

[jenriver]

Resolves #<issue_number_goes_here>

Please check issues for any pending model implementations. Consider opening issue if none exists.

Reference

Colab Notebook

Checklist

• I have read contribution guidelines.
• [] I have added all the necessary unit tests for my change. (run_model.py for usage, test_outputs.py and model_validation_colab.ipynb (if applicable) for quality).
• [] I have verified that my change does not break existing code and all unit tests pass.
• I have added all appropriate doc-strings/documentation.
• My PR is based on the latest changes of the main branch (if unsure, rebase the code).
• I have signed the Contributor License Agreement.