chore(SDBI-3897): Address security vulnerabilities associated with Va…#1
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chore(SDBI-3897): Address security vulnerabilities associated with Va…#1
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…rdict. * Upgraded htsjdk to 3.0.5; this is not the latest available but the latest that does not carry compilation errors. * Upgraded additional transitive dependencies with vulnerabilities (ant, commons-compress and snappy-java) * Bumped version to 1.8.3.1 * Updated gradlew version to 6.9.3 as current one seems to be problematic to build a docker image. * Explicitly point to maven repository provoding url as the default seems to be problematic when building a docker image. * Deleted pre-builded release zip files.
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I would suggest not removing the Binary files as its going to make it harder to upstream any changes to the original repo. https://github.com/AstraZeneca-NGS/VarDictJava Since they still have the versions in the repo. |
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@TechIsCool Thanks. I rather keep it simple and leave as it is for now. If we do a pull request toward the original repo I'm ok with the additional work or even rather suggest to remove those earlier versions as in general is not a good idea hold on to them in the source code tree; they should we using some other tool to archive them. |
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…rdict.