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inhyeoklee/README.md

I’m a 2nd-year PhD student in the Beaulieu-Jones Lab at the UChicago Center for Computational Medicine & Clinical AI!

I investigate interpretable features and biomarkers in clinical AI foundation models via mechanistic interpretability methods.

github contribution grid snake animation

🛠️ Languages and Tools


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  1. Using-CellChat-for-Ligand-Receptor-Interaction-Analysis Using-CellChat-for-Ligand-Receptor-Interaction-Analysis Public

    This project uses CellChat R package to decipher ligand-receptor network among the cell types of interest.

    R 1

  2. contextual_retriever contextual_retriever Public

    ContextualRetriever enhances document retrieval accuracy by leveraging Voyage AI models for embedding & reranking models, and the GEMINI model for context and retrieval generation.

    Python 1

  3. DNA-LLM DNA-LLM Public

    Jupyter Notebook 1

  4. 10X-Visium-Analysis-for-Spatial-Mapping-of-Gene-Expressions 10X-Visium-Analysis-for-Spatial-Mapping-of-Gene-Expressions Public

    This Jupyter notebook provides a pipeline for spatial analysis using the Scanpy library. The analysis includes data preprocessing, integration, and visualization.

    Jupyter Notebook 1

  5. paper2slides-skill paper2slides-skill Public

    Turn a scientific paper PDF into a presentation slide deck. An Antigravity / Claude Code agent skill.

    HTML 1