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Makefile aligner_sw.h sse_util.h #1

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10 changes: 10 additions & 0 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -138,6 +138,11 @@ BITS=32
ifeq (x86_64,$(shell uname -m))
BITS=64
endif

ifeq (aarch64,$(shell uname -m))
BITS=64
endif

# msys will always be 32 bit so look at the cpu arch instead.
ifneq (,$(findstring AMD64,$(PROCESSOR_ARCHITEW6432)))
ifeq (1,$(MINGW))
Expand All @@ -155,6 +160,11 @@ ifeq (64,$(BITS))
endif
SSE_FLAG=-msse2

ifeq (aarch64,$(shell uname -m))
BITS_FLAG =
SSE_FLAG =
endif

DEBUG_FLAGS = -O0 -g3 $(BIToS_FLAG) $(SSE_FLAG)
DEBUG_DEFS = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS)\""
RELEASE_FLAGS = -O3 $(BITS_FLAG) $(SSE_FLAG) -funroll-loops -g3
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6 changes: 6 additions & 0 deletions aligner_sw.h
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Expand Up @@ -70,7 +70,13 @@
#include <iostream>
#include <limits>
#include "threading.h"

#ifdef __aarch64__
#include "SSE2NEON.h"
#else
#include <emmintrin.h>
#endif

#include "aligner_sw_common.h"
#include "aligner_sw_nuc.h"
#include "ds.h"
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6 changes: 6 additions & 0 deletions sse_util.h
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Expand Up @@ -24,7 +24,13 @@
#include "ds.h"
#include "limit.h"
#include <iostream>

#ifdef __aarch64__
#include "SSE2NEON.h"
#else
#include <emmintrin.h>
#endif


class EList_m128i {
public:
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