Release v2.5.1

What's Changed

• Hot fix cosmx metadata conf dec25 by @avikdatta in #142

Full Changelog: v2.5.0...v2.5.1

Release v2.5.0

What's Changed

• Cosmx metadata registration dec25 by @avikdatta in #141

Full Changelog: v2.4.1...v2.5.0

Release v2.4.1

What's Changed

• added git tag based release config by @avikdatta in #139

Full Changelog: 2.4...v2.4.1

release v2.4

What's Changed

• Airflow v2.10.4 by @avikdatta in #104
• Fix dag25 by @avikdatta in #108
• Fix run templates july 25 by @avikdatta in #117
• updated email template by @avikdatta in #119
• added hotfix for redis queue check by @avikdatta in #120
• Adding COSMX data export pipeline by @avikdatta in #121
• Hot fix: switching off cosmx project metadata registration by @avikdatta in #122
• Hot fix for supporting older AtoMx output format by @avikdatta in #123
• Hotfix aug25 COSMX fov annotation by @avikdatta in #124
• changes to raw analysis v2 api paths by @avikdatta in #126
• updated db connection module for ssl confs by @avikdatta in #127
• Register analysis oct25 by @avikdatta in #128
• updated raw analysis metadata fetching api by @avikdatta in #129
• fixed dag44 xcom by @avikdatta in #131
• added analysis pipeline seeding after registration by @avikdatta in #132
• updated missing expect command by @avikdatta in #133
• accept custom email template for analysis by @avikdatta in #134
• Sc flex pipeline nov25 by @avikdatta in #135
• Metadata registration oct25 by @avikdatta in #130
• added flex sample dir listing by @avikdatta in #136

Full Changelog: 2.3...2.4

pipeline_march_2025

What's Changed

• Spaceranger wrapper by @avikdatta in #86
• Curio seq by @avikdatta in #88
• Improved tests by @avikdatta in #90
• Fix cellranger july24 by @avikdatta in #92
• updated readme by @avikdatta in #99

Full Changelog: 2.2...2.3

pipeline_june_2024

What's Changed

• Analysis feb24 by @avikdatta in #81

Full Changelog: 2.1...2.2

pipeline_jan_2024

• Move to Airflow v2.6.2
• Updates for analysis pipelines

pipeline_June_2023

Pipelines running on Airflow v2.2.2

Mini release 2020 Jan - Notebook runner

List of changes

• Added a module to run jupyter nbconvert within singularity container
• Replaced Scanpy report for single cell data analysis with a notebook

Mini release 2020 Jan - wgs

List of changes

• Added GATK BQSR and HaplotypeCaller GVCF step for alignment pipeline