This module is an implementation of methods to analyze and interpret single molecule force spectroscopy (smFS) data. It is largely based on the calculations reported by Cossio, Hummer and Szabo in PNAS (2015). It includes a module for the estimation of the kinetics from the results. The code is distributed under the MIT License. Use at your own risk.
Simply download the code and leave it in your working directory. To generate the
extension from the pyx file simply run
python setup.py build_ext --build-lib smfsmodels
This should result in a cossio.so file that you can then import.
Jupyter notebooks with working examples are included.