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Simulate Hi-C data for any rearranged karyotype - fast!

This package can be used to simulate Hi-C data for highly rearranged genomes, using the gGnome framework. It contains utilities to simulate hypothetical rearranged genomes.

Disclaimer: the data used in the development of this model are post-processed from the high-depth Hi-C library published by Rao et. al. (2014). See the original paper here