1.9.2

What's Changed

• update song/score modules version
• add defaults to song/score containers and versions

Full Changelog: 1.9.1...1.9.2

dna-seq-alignment.v1.9.2

• Release dna-seq-alignment.v1.9.2 (8e0ee44)
• Package dna-seq-alignment.v1.9.2.tar.gz (sha256: dc096cad08204529cefe4782d761d34ac47de7bd0f317cab952a4ba79e120a8c)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment@1.9.2
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment/main.nf -r dna-seq-alignment.v1.9.2 -params-file <params-json-file>

1.9.1

What's Changed

• Update to use song-score-download@2.8.0 and song-score-upload@2.9.0 with song/score containers switching to ghcr.io and latest versions (score-client: 5.8.1 & song-client: 5.0.2)

dna-seq-alignment.v1.9.1

• Release dna-seq-alignment.v1.9.1 (5677186)
• Package dna-seq-alignment.v1.9.1.tar.gz (sha256: 58ae593867df08ce05eef6d7e10d5f4e6a9c9db8744b4ee3efc761ed3027259f)
• Package URI github.com/icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment@1.9.1
• Run the package: nextflow run icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment/main.nf -r dna-seq-alignment.v1.9.1 -params-file <params-json-file>

1.9.0

• update the workflow to use package: bwa-mem-aligner.v0.2.0 and bam-merge-sort-markdup.v0.2.0, which have fixes for the usage of temp_dir to resolve abnormal resume issue

dna-seq-alignment.v1.9.0

• Release dna-seq-alignment.v1.9.0 (c08bf11)
• Package dna-seq-alignment.v1.9.0.tar.gz (sha256: 20a4c189997c8e93320f19f129571ed8d7d48b96ac24717edd247048c4168787)

1.8.1

• updated to payload-gen-dna-alignment@0.5.0, which is needed by ARGO SV working group to run WGS alignment job on HPC environment

Note:

1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
2. requires Nextflow 20.07.1 or higher

dna-seq-alignment.v1.8.1

• Release dna-seq-alignment.v1.8.1 (f82a967)
• Package dna-seq-alignment.v1.8.1.tar.gz (sha256: c6a0c79a86849b1a5a79db7585417cf1d410d2e18f89528c9e6f964c7185c49a)

1.8.0

• updated to payload-gen-dna-alignment@0.4.0 and payload-gen-dna-seq-qc@0.6.0 WFPM packages with support for new data_subtypes and adjusted dataType
• updated to song-score-download@2.6.2 and song-score-upload@2.6.1

Note:

1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
2. requires Nextflow 20.07.1 or higher

dna-seq-alignment.v1.8.0

• Release dna-seq-alignment.v1.8.0 (d2fb7af)
• Package dna-seq-alignment.v1.8.0.tar.gz (sha256: b3f1a76d5c037efb7ac061c7b051ca16b5364e51567de5539195406e86fdacdd)