theia

Codebase for our microRNA-mRNA interactions

Visualization at: https://www.schaterji.io/theia/

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
HARDCOPY.txt		HARDCOPY.txt
LICENSE		LICENSE
README.md		README.md
SNMNMF_main.py		SNMNMF_main.py
SNMNMF_train.py		SNMNMF_train.py
cluster_comparison.py		cluster_comparison.py
config.ini		config.ini
config.py		config.py
contour_slices.py		contour_slices.py
louvain_test.py		louvain_test.py
mRNA_list.txt		mRNA_list.txt
matrices_to_modules.py		matrices_to_modules.py
miRNA_draw.py		miRNA_draw.py
miRNA_list.txt		miRNA_list.txt
miRNA_load_expression.py		miRNA_load_expression.py
miRNA_main.py		miRNA_main.py
miRNA_module.py		miRNA_module.py
miRNA_module2.py		miRNA_module2.py
miRNA_nmf_v3.py		miRNA_nmf_v3.py
miRNA_nmf_v5.py		miRNA_nmf_v5.py
miRNA_score.py		miRNA_score.py
miRNA_synthetic_data.py		miRNA_synthetic_data.py
miRNA_synthetic_data_v3.py		miRNA_synthetic_data_v3.py
miRNA_tiresias.py		miRNA_tiresias.py
parse_BioGRID.py		parse_BioGRID.py
parse_TargetScan.py		parse_TargetScan.py
parse_gene.py		parse_gene.py
parse_miRTarBase.py		parse_miRTarBase.py
pimim.py		pimim.py
pimim_main.py		pimim_main.py
pimim_v2.py		pimim_v2.py
plot_BRCA_comparisons.py		plot_BRCA_comparisons.py
plot_ari_and_f1_comparison.py		plot_ari_and_f1_comparison.py
plot_ari_and_f1_scaling_comparison.py		plot_ari_and_f1_scaling_comparison.py
plot_detection_rate.py		plot_detection_rate.py
plot_detection_rate_bar.py		plot_detection_rate_bar.py
plot_distributions.py		plot_distributions.py
plot_pr_curve.py		plot_pr_curve.py
plot_theia_ari_and_f1.py		plot_theia_ari_and_f1.py
plot_theia_hyperparameter_results.py		plot_theia_hyperparameter_results.py
pvectorize.py		pvectorize.py
test_SNMNMF_synthetic.py		test_SNMNMF_synthetic.py
test_Theia_synthetic.py		test_Theia_synthetic.py
test_Tiresias_synthetic.py		test_Tiresias_synthetic.py
test_pimim_synthetic.py		test_pimim_synthetic.py
texput.log		texput.log
utils.py		utils.py

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

theia

About

Uh oh!

Releases

Packages

Uh oh!

Contributors

Uh oh!

Languages

License

icanforce/theia

Folders and files

Latest commit

History

Repository files navigation

theia

About

Resources

License

Uh oh!

Stars

Watchers

Forks

Releases

Packages 0

Uh oh!

Contributors

Uh oh!

Languages

Packages