MM285K array datasets?

[jtxyz16]

Just wondering if this is compatible to MM285 array dataset processed from SeSaMe?

[biobenkj]

Great question. It should be okay to run on the mouse array, but I haven't tested it. If you want to give it a shot and it blows up, let me know. Otherwise, I will work on incorporating the manifest into the metadata to pull out relevant probes. I would probably limit to larger resolution sizes given the probe density of the array. Thanks for trying compartmap!

[jtxyz16]

Thanks for your reply and for this awesome tool. I'll try out running it. I don't need super high res, maybe 500kb or even 1MB or so.. In any case, here is the manifest for Mouse 285K Infinium array: http://zwdzwd.github.io/InfiniumAnnotation#mouse

One more thing, I may not be able to find it, but just wondering if is there an embedded function to convert/prepare the SigDF (Sesame) metadata into "obj" for compartmap input.

[biobenkj]

I will try and rig something up as a conversion function for you today. I know I've done this in the past, so I will revisit some old code. It may be the older SigSet object out of sesame before it was switched over to the SigDF object, but I'll have to check.

[jtxyz16]

Hi.. may I follow-up on this?