Methylation-aware structural variant calling

[bounlu]

Hi,

Does structural variant calling suggested here also work for targeted methylseq data?

Also, do you know of any tool/pipeline for methylation-aware CNV and fusion calling from WGBS/targeted methylseq data?

[jamorrison]

Hi @bounlu,

Tagging @biobenkj. He should be able to better answer both of your questions.

Cheers,
Jacob

[bounlu]

Hi @biobenkj. Any thoughts on this?