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Problem

With recent versions of anndata, importing read_* functions from the top-level
anndata module triggers a FutureWarning, as these functions have been moved
to anndata.io.

This warning currently appears when importing SIMBA on environments with newer
anndata versions.

Changes

  • Import read_* functions from anndata.io instead of the top-level anndata
  • Keep a fallback to the old import path for compatibility with older anndata
    versions

@huidongchen huidongchen merged commit 2da4787 into huidongchen:master Jan 6, 2026
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2 participants