Create COVID19_deaths #33
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
To get COVID-19 mortality data on my own I did the following, not sure if its the most efficient way but it did work for me. I used some original R code from this GitHub page and added the variables for COVID I needed (found here: https://gis.cdc.gov/grasp/flu7/GetPhase07InitApp?appVersion=Public). I labeled each code chunk (this code was copied from the rmd file I used) with the R file name I used from this GitHub page (https://github.com/hrbrmstr/cdcfluview/tree/master/R) and you can find where I added the COVID variables on line 440 (also described in my comment on line 349). The last part of the rmd file includes some SQL code I added which formats a table to look like the CSV file downloaded from the CDC fluview interactive website: https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html For this to work, I think you need to load the cdcfluview package -> library(cdcfluview) If you could please try this and let me know it works for you that would be great.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
To get COVID-19 mortality data on my own I did the following, not sure if its the most efficient way but it did work for me.
I used some original R code from this GitHub page and added the variables for COVID I needed (found here: https://gis.cdc.gov/grasp/flu7/GetPhase07InitApp?appVersion=Public).
I labeled each code chunk (this code was copied from the rmd file I used) with the R file name I used from this GitHub page (https://github.com/hrbrmstr/cdcfluview/tree/master/R) and you can find where I added the COVID variables on line 440 (also described in my comment on line 349).
The last part of the rmd file includes some SQL code I added which formats a table to look like the CSV file downloaded from the CDC fluview interactive website: https://gis.cdc.gov/grasp/fluview/fluportaldashboard.html
For this to work, I think you need to load the cdcfluview package -> library(cdcfluview)
If you could please try this and let me know it works for you that would be great.