Skip to content

Navigation Menu

Appearance settings

hoogenboom-group

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

hoogenboom-group

8 followers
https://www.hoogenboomlab.org/

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

PSF-Extractor PSF-Extractor Public

Characterize the PSF of an optical setup

Jupyter Notebook 9
SF SF Public

Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

Jupyter Notebook 4 1

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All Jupyter Notebook Python Shell

Sort

Select order

Last updated Name Stars

Showing 10 of 21 repositories

scripted-render-pipeline Public
automated pipeline interfacing with render-ws rest api

hoogenboom-group/scripted-render-pipeline’s past year of commit activity

Python 0 GPL-3.0 0 6 (1 issue needs help) 2 Updated Dec 11, 2025
PSF-Extractor Public
Characterize the PSF of an optical setup

hoogenboom-group/PSF-Extractor’s past year of commit activity

Jupyter Notebook 9 CC-BY-4.0 0 3 0 Updated Jul 7, 2025
iCAT-workflow Public
Post-processing workflow for integrated correlative array tomography (iCAT)

hoogenboom-group/iCAT-workflow’s past year of commit activity

Jupyter Notebook 2 CC-BY-4.0 0 3 0 Updated Jun 27, 2025
interactive-render-workflow Public
Interactive workflow for aligning volume electron microscopy datasets.

hoogenboom-group/interactive-render-workflow’s past year of commit activity

Jupyter Notebook 1 GPL-3.0 0 4 0 Updated May 9, 2025
napari-webknossos-reader Public
Napari plugin for reading local and remote webknossos datasets

hoogenboom-group/napari-webknossos-reader’s past year of commit activity

Python 0 GPL-3.0 0 3 0 Updated Apr 15, 2025
em-infrastructure Public
Documentation and configuration for Electron Microscopy server infrastructure

hoogenboom-group/em-infrastructure’s past year of commit activity

Shell 0 MIT 0 0 0 Updated Apr 10, 2025
protocol-paper-ENZEL Public

hoogenboom-group/protocol-paper-ENZEL’s past year of commit activity

Python 0 CC-BY-4.0 0 0 0 Updated Feb 26, 2025
fastem-sofima Public
Scable Optical Flow-based Image Alignment (SOFIMA) of FAST-EM datasets.

hoogenboom-group/fastem-sofima’s past year of commit activity

Jupyter Notebook 0 GPL-3.0 0 1 (1 issue needs help) 0 Updated Nov 29, 2024
mitonet-seg Public
MitoNet inference on Volume EM datasets

hoogenboom-group/mitonet-seg’s past year of commit activity

Python 0 0 1 0 Updated Nov 28, 2024
catmaid-docker Public Forked from catmaid/catmaid-docker
Docker compose application for CATMAID

hoogenboom-group/catmaid-docker’s past year of commit activity

Shell 0 3 0 0 Updated Nov 1, 2024

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.