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Inconsistencies between GRCh38 BedGraph download from HoffmanLab and bedgraph created from UCSC bigWig file

Status: Open.

#21 In hoffmangroup/umap;

· toddajohnson opened on Sep 26, 2024

questions about results of ubismap.py

Status: Open.

#20 In hoffmangroup/umap;

· woooh324 opened on Sep 25, 2024

Some questions with running the Umap process

Status: Open.

#19 In hoffmangroup/umap;

· Miracle-Yao opened on Sep 21, 2024

kmers generated only for chr10

Status: Open.

#18 In hoffmangroup/umap;

· altuda opened on Sep 5, 2024

Indexes are 0-base not 1-base

Status: Open.

#17 In hoffmangroup/umap;

· niederhuth opened on Aug 12, 2024

Trying to compile umap, but can't find setup.py file...

Status: Open.

#16 In hoffmangroup/umap;

· EgGo01 opened on Feb 20, 2024

BED files contain trackline headers

Status: Open.

#14 In hoffmangroup/umap;

· EricR86 opened on Nov 14, 2023

HTTP error

Status: Open.

#13 In hoffmangroup/umap;

· Adnanhashim opened on Oct 13, 2023

Issues of using umap (1. where to download the latest version; 2. potential bug of unify_bowtie.py)

Status: Open.

#12 In hoffmangroup/umap;

· kyhkkm opened on Jun 20, 2023

As a novice to bioinformatics, it’s very difficult for me to use qsub to complete my work

Status: Open.

#11 In hoffmangroup/umap;

· BioOmics opened on Mar 6, 2023

Some hg38 Bismap k100 tracks do not contain chr1 or chr2

Status: Open.

#9 In hoffmangroup/umap;

· njspix opened on Jun 23, 2022

Why does not Umap k100 (multi-read) contain X chromosome?

Status: Open.

#4 In hoffmangroup/umap;

· yamawada opened on Nov 1, 2021