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tkemmer merged 2 commits into from
Mar 20, 2026
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Update citation hints #33

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Update citation hints
tkemmer Mar 20, 2026
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README: fix headings
tkemmer Mar 20, 2026
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18 changes: 11 additions & 7 deletions CITATION.bib
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Original file line number Diff line number Diff line change
@@ -1,8 +1,12 @@
@misc{BiochemicalVisualization.jl,
author = {Andreas Hildebrandt <andreas.hildebrandt@uni-mainz.de> and contributors},
title = {BiochemicalVisualization.jl},
url = {https://github.com/hildebrandtlab/BiochemicalVisualization.jl},
version = {v0.1.0},
year = {2022},
month = {12}
@article{BiochemicalAlgorithms.jl,
author = {Jennifer Leclaire and Thomas Kemmer and Andreas Hildebrandt},
title = {Structure-based bioinformatics with BiochemicalAlgorithms.jl},
journal = {Proceedings of the JuliaCon Conferences},
publisher = {The Open Journal},
volume = {7},
number = {78},
pages = {188},
year = {2025},
doi = {10.21105/jcon.00188},
url = {https://doi.org/10.21105/jcon.00188}
}
11 changes: 8 additions & 3 deletions README.md
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Expand Up @@ -5,15 +5,15 @@

BiochemicalVisualization is the graphical interface for [BiochemicalAlgorithms.jl](https://github.com/hildebrandtlab/BiochemicalAlgorithms.jl), providing different representations for biomolecular systems. All representations can be visualized in the form of interactive web widgets that are embeddable in Jypyter notebooks.

# Installation
## Installation
To install BiochemicalVisualization, open a Julia REPL, switch to the package mode by pressing `]`, and type


```julia
pkg> add BiochemicalVisualization
```

# Usage
## Usage
```julia
using BiochemicalAlgorithms, BiochemicalVisualization

Expand All @@ -31,6 +31,11 @@ ball_and_stick(sys)
```
![Ball-and-stick representation of a simple molecule](https://raw.githubusercontent.com/hildebrandtlab/BiochemicalVisualization.jl/develop/docs/src/tutorials/gfx/ball-and-stick.png)

# Contributing
## Contributing
You have ideas for improvements, criticism, or ran into problems? You are looking for a feature that you know from BALL?
Feedback and contributions are very welcome. Check out our [guidelines](CONTRIBUTING.md) and use our [issue tracker](https://github.com/hildebrandtlab/BiochemicalVisualization.jl/issues) or contact us [via e-mail](mailto:hildebrandtlab@uni-mainz.de?subject=BiochemicalVisualization.jl).

## Citing
If you use BiochemicalVisualization.jl in your research, please cite the following publication:
> Leclaire et al., (2025). Structure-based bioinformatics with BiochemicalAlgorithms.jl.
> Proceedings of the JuliaCon Conferences, 7(78), 188, <https://doi.org/10.21105/jcon.00188>
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