hildebrandtlab · ppfannes · Apr 15, 2023
diff --git a/bachelor_thesis_pfannes/.gitlab-ci.yml b/bachelor_thesis_pfannes/.gitlab-ci.yml
@@ -0,0 +1,19 @@
+# This file is a template, and might need editing before it works on your project.
+# To contribute improvements to CI/CD templates, please follow the Development guide at:
+# https://docs.gitlab.com/ee/development/cicd/templates.html
+# This specific template is located at:
+# https://gitlab.com/gitlab-org/gitlab/-/blob/master/lib/gitlab/ci/templates/Pages/HTML.gitlab-ci.yml
+
+# Full project: https://gitlab.com/pages/plain-html
+pages:
+  stage: deploy
+  script:
+    - mkdir .public
+    - cp -r ./src/MoleculeVisualizer/* .public
+    - rm -rf public
+    - mv .public public
+  artifacts:
+    paths:
+      - public
+  rules:
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
diff --git a/bachelor_thesis_pfannes/README.md b/bachelor_thesis_pfannes/README.md
@@ -0,0 +1,49 @@
+# Bachelor Thesis
+
+This is where important information and progress regarding my project will go.
+
+> ### Installation
+> You need to make sure you have the latest version of [node.js](https://nodejs.org/en/download/) installed. \
+> The main component of the project is a visualization library called [three.js](https://threejs.org/). All libraries
+> used by the project are managed via the [npm package manager](https://www.npmjs.com/). Install them by executing the following commands: 
+> ```bash
+> > cd bachelor_thesis/src/MoleculeVisualizer
+> > npm install
+> ```
+
+> ### Usage
+> MoleculeVisualizer is built as a single page application, so you need to run a local webserver in order to use it.
+> The simplest solution is to use the [serve package](https://www.npmjs.com/package/serve) from npm by running the following
+> inside the MoleculeVisualizer directory:
+> ```bash
+> > npx serve
+> ```
+> After executing this command, copy the URL that shows up in the CLI into your browser and the MoleculeVisualizer
+> should start up.
+
+> ### Priority List
+>1. Grundlegende Visualisierungen: VdW (also nur Kugeln), Ball and Stick (Kugeln und Zylinder), Wireframe
+>
+>2. Verwendung über wie auch immer geartete API (damit wir es mit Daten füttern können)
+>
+>3. Möglichkeit, Meshes zu visualisieren
+>
+>4. Möglichkeit, Text-Label zu plazieren
+>
+>5. Stereo-Visualisierung
+>
+>6. Interaktionsmöglichkeiten (im Moment reicht es, die in der API zu haben, so dass man sich da später einhängen kann)
+>
+>7. Unterschiedliche Rendering-Möglichkeiten (Clipping, Capping, Transparenz, unterschiedliche Färbungen)
+>
+>8. Komplexere Visualisierungen (Ribbon-Modelle, Secondary Structure, SES, SAS, …) -> Würde erstmal durch Meshes abgedeckt
+
+
+> ### Current Feature ToDo list
+> 1. Add API for integration into Julia-BALL
+
+> ### Current bug list
+> None
+
+> ## License
+> [MIT](https://choosealicense.com/licenses/mit/)
diff --git a/bachelor_thesis_pfannes/Research/.idea/.gitignore b/bachelor_thesis_pfannes/Research/.idea/.gitignore
diff --git a/bachelor_thesis_pfannes/Research/.idea/Research.iml b/bachelor_thesis_pfannes/Research/.idea/Research.iml
diff --git a/bachelor_thesis_pfannes/Research/.idea/modules.xml b/bachelor_thesis_pfannes/Research/.idea/modules.xml
diff --git a/bachelor_thesis_pfannes/Research/.idea/vcs.xml b/bachelor_thesis_pfannes/Research/.idea/vcs.xml
diff --git a/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/.gitignore b/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/.gitignore
@@ -0,0 +1,24 @@
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+lerna-debug.log*
+
+node_modules
+dist
+dist-ssr
+*.local
+
+# Editor directories and files
+.vscode/*
+!.vscode/extensions.json
+.idea
+.DS_Store
+*.suo
+*.ntvs*
+*.njsproj
+*.sln
+*.sw?
diff --git a/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/favicon.svg b/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/favicon.svg
diff --git a/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/index.html b/bachelor_thesis_pfannes/Research/InstancedMesh_Performance_1/index.html
@@ -0,0 +1,24 @@
+<!DOCTYPE html>
+<html lang="en">
+  <head>
+    <meta charset="UTF-8" />
+    <link rel="icon" type="image/svg+xml" href="favicon.svg" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <style>
+      #info {
+        background-color: rgba(0,0,0,0.75);
+      }
+
+      .lil-gui .gui-stats {
+        line-height: var(--widget-height);
+        padding: var(--padding);
+      }
+    </style>
+    <title>InstancedMesh Performance Test 1</title>
+  </head>
+  <body>
+    <div id="app"></div>
+    <div id="container"></div>
+    <script type="module" src="/main.js"></script>
+  </body>
+</html>