dev to master

Dockerfile

@@ -3,15 +3,14 @@
 # A container for the core semantic-search capability.
 #
 ######################################################
-FROM python:3.12-alpine3.21
+FROM python:alpine3.22
 
 
 # Install required packages
 RUN apk update && \
     apk add g++ make cargo rust
 
 RUN apk upgrade -Ua
-RUN apk add "libxml2=2.13.4-r6"
 
 RUN pip install --upgrade pip
 # Create a non-root user.

src/dug/core/parsers/dbgap_parser.py

@@ -73,8 +73,9 @@ def __call__(self, input_file: InputFile) -> List[Indexable]:
 
             # Create DBGaP links as study/variable actions
             elem.collection_action = utils.get_dbgap_study_link(study_id=elem.collection_id)
-            elem.action = utils.get_dbgap_var_link(study_id=elem.collection_id,
-                                                   variable_id=elem.id.split(".")[0].split("phv")[1])
+            if "phv" in elem.id:
+                elem.action = utils.get_dbgap_var_link(study_id=elem.collection_id,
+                                                       variable_id=elem.id.split(".")[0].split("phv")[1])
             # Add to set of variables
             logger.debug(elem)
             elements.append(elem)

src/dug/server.py

@@ -16,6 +16,7 @@
 APP = FastAPI(
     title="Dug Search API",
     root_path=os.environ.get("ROOT_PATH", ""),
+    terms_of_service=os.environ.get("DUG_TOS_URL", None),
 )
 
 APP.add_middleware(