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[Application] Integrate all AANRI analyses into manuscript & repo

Status: Open.

Task

#84 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Robustness across LAI methods: RFMix vs FLARE

Status: Open.

Task

#83 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

·  

Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Genome-wide admixture mapping using RFMix-reader

Status: Open.

Task

#82 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Local-ancestry–resolved multi-locus AD risk burden

Status: Open.

Task

#81 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

·  

Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Local-ancestry–aware association at key AD loci

Status: Open.

Task

#80 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Visualize local ancestry tracks & method concordance at AD loci

Status: Open.

Task

#79 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Analyze AD risk allele frequencies by local ancestry

Status: Open.

Task

#78 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Validate global ancestry estimates in AANRI

Status: Open.

Task

#77 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Construct variant × sample × ancestry analytic tables

Status: Open.

Task

#76 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

·  

Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Implement AANRI LAI parsing & interpolation pipeline

Status: Open.

Task

#75 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

[Application] Define AANRI real-data analysis plan & AD loci

Status: Open.

Task

#74 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 18, 2025

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Milestone 6: Real Data Application – AANRI AD Risk Loci

Address FLARE accuracy issues

Status: Open.

Bug

#52 In heart-gen/rfmix_reader-benchmarking;

· KrotosBenjamin opened on Nov 15, 2025

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Milestone 4: RFMix vs FLARE Global & Local Ancestry Comparisons