RNA L1/L2 v2

RNA L1/L2 v2

This release publishes the RNA dataset artifacts that are intentionally excluded from git (data/output/**, pipelines/**/reports/**).

Included

• 16 compressed RNA tables (*.tsv.gz)
• 15 non-sample validation reports (all PASS)
• key audit artifacts for tRNA v2 and ENST↔URS coverage
• manifest.json (row counts, checksums, commit)
• SHA256SUMS.txt

Validation summary

• non-sample validations: 15/15 PASS

Notes

• Structural low-coverage items (ENST↔URS, Rfam full coverage, PDB sparsity) are data-source constraints.
• Active optimization line remains tRNA anticodon (v2 included in this release).

Interaction L2 v1

Interaction L2 v1

Interaction-only release aligned with PR #8 merge scope.

Included evidence tables (compressed .tsv.zst):

• ppi_method_context_v2
• ppi_function_context_v2
• psi_activity_context_v2
• psi_structure_evidence_v2
• rpi_site_context_v2
• rpi_domain_context_v2
• rpi_function_context_v2
• interaction_cross_validation_v2
• interaction_aggregate_score_v2
• interaction_ontology_mapping_v2

Quality summary (all PASS):

• A PPI semantic enrichment QA: PASS
• B PSI activity/structure enrichment QA: PASS
• C RPI site/domain/function gates: PASS
• D cross-validation + aggregate score QA: PASS
• E ontology mapping gates: PASS
• interaction_release_local package: PASS

See manifest for sha256 and exact file sizes.

Molecule L1/L2 v2

Molecule L1/L2 v2

This release publishes the molecule v2 data snapshot built from the newly merged pipelines:

• molecule_xref_enrichment_v2
• molecule_3d_registry
• molecule_semantic_layer
• molecule_activity_fusion

Quality gates (local full run)

• xref v2 QA: PASS
  • chembl_id delta vs v1: +464
  • pubchem_cid delta vs v1: +87
• 3D registry v1 QA: PASS
  • backlink rate: 1.0
• semantic tags v1 QA: PASS
  • ChEBI expandable rate among mapped rows: 0.999858
• activity fusion v2 QA: PASS
  • evidence rows: 3,223,952
  • edge rows: 2,410,389
  • hard gate chembl_hard_gate_not_degraded: PASS
  • conflict audit groups: 46,821

Asset integrity

• manifest.json and SHA256SUMS.txt are included.
• Large TSV outputs are distributed as .tsv.gz release assets.

Notes

• Per repository rule, data/output/** and pipelines/**/reports/** are not committed to git history.
• This release is the data-distribution snapshot corresponding to merged PR #7.

RNA L1 v1

RNA L1 v1 (miRNA + mRNA)

Artifacts (download):

• rna_master_v1.tsv.gz
• rna_master_mirna_v1.tsv.gz
• rna_master_mrna_v1.tsv.gz

QA:

• rna_master_v1.validation.json (quality gates)
• manifest.json (sha256 + sizes)

Repo code/docs:

• Branch: feat/rna-l1-v1