Search results

Can JunctionSeq be used in long-read RNA-seq ONT data?

Status: Open.

#60 In hartleys/JunctionSeq;

· kaanokay opened on Jun 5, 2023

QoRTs/JunctionSeq with Rsubread alignment

Status: Open.

#58 In hartleys/JunctionSeq;

· jmbono opened on Mar 16, 2021

Normalized gene counts of 0?

Status: Open.

#57 In hartleys/JunctionSeq;

· alanbergland opened on Mar 7, 2021

Sig gene wtih the P-value as NA

Status: Open.

#56 In hartleys/JunctionSeq;

· zhouqz opened on Jan 17, 2021

Junctionseq marked as deprecated in bioconductor.

Status: Open.

#55 In hartleys/JunctionSeq;

· tbrittoborges opened on Dec 18, 2020

weird dispersion plot

Status: Open.

#54 In hartleys/JunctionSeq;

· scseekers opened on Nov 10, 2020

writeCompleteResults : Error in data.frame(..., check.names = FALSE)

Status: Open.

#53 In hartleys/JunctionSeq;

· YanliangDou opened on Oct 29, 2020

Unable to view splice junction tracks on ucsc browser

Status: Open.

#52 In hartleys/JunctionSeq;

· varsha090597 opened on Aug 6, 2020

Error: all samples have 0 counts for all genes. check the counting script

Status: Open.

#51 In hartleys/JunctionSeq;

· HeenaBioinfo opened on Jul 31, 2020

Error in estimateSizeFactorsForMatrix(counts.byGenes)

Status: Open.

#50 In hartleys/JunctionSeq;

· HeenaBioinfo opened on Jul 29, 2020

estimateEffectSizes: Error in if (any(dispersion < 0)) stop("dispersion values must be non-negative")

Status: Open.

#49 In hartleys/JunctionSeq;

· ashish674675 opened on Jul 21, 2020

independent filtering on the gene counts

Status: Open.

#48 In hartleys/JunctionSeq;

· shivarice opened on May 12, 2020