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Issues with predict_haplo

Status: Open.

#21 In gwcbi/haphpipe;

· marieleoz opened on May 30, 2023

refine assembly fails

Status: Open.

#20 In gwcbi/haphpipe;

· antoine4ucsd opened on Oct 4, 2022

use_jdk_deflater

Status: Open.

#19 In gwcbi/haphpipe;

· antoine4ucsd opened on Oct 1, 2022

Checking that sequence is multiple of 3 for pairwise_align.

Status: Open.

#14 In gwcbi/haphpipe;

· kmgibson opened on Dec 9, 2019

Add more commentary into stage-level codes

Status: Open.

#11 In gwcbi/haphpipe;

· kmgibson opened on Oct 25, 2019

Replace GATK with Samtools pileup

Status: Open.

#8 In gwcbi/haphpipe;

· kmgibson opened on Oct 25, 2019

Make HAPHPIPE into a Conda package

Status: Open.

#7 In gwcbi/haphpipe;

· kmgibson opened on Oct 25, 2019

Add another haplotype caller module

Status: Open.

#6 In gwcbi/haphpipe;

· kmgibson opened on Oct 25, 2019