PyStarcode#21

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rcortini wants to merge 31 commits intogui11aume:masterfrom

rcortini:master

Commits on May 24, 2018

first working module
Ruggero Cortini
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throws exception for non existent files
Ruggero Cortini
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added keywords to the main "starcode" method
Ruggero Cortini
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added "verbose" kwarg
Ruggero Cortini
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added "threads" kwarg
Ruggero Cortini
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finalized kwargs
Ruggero Cortini
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transferred output to separate function in starcode
Ruggero Cortini
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read files now in main
Ruggero Cortini
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Commits on Jun 1, 2018

"starcode" function takes gstack_t as argument
Ruggero Cortini
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Commits on Jun 12, 2018

put flag check in separate function
Ruggero Cortini
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fixed all compiler warnings
Ruggero Cortini
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new function "starcode" takes list as input
Ruggero Cortini
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new layout of output, doesn't work yet
Ruggero Cortini
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Commits on Jun 13, 2018

added test.py to test
Ruggero Cortini
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fixed check_input function, takes flags not chars
Ruggero Cortini
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pystarcode.starcode returns a dictionary with starcoded barcodes
Ruggero Cortini
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Commits on Jun 14, 2018

pystarcode.starcode outputs all the information that starcode does
Ruggero Cortini
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main starcode is now mostly a sequence of encapsulated functions
Ruggero Cortini
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removed starcode_c function from python module
Ruggero Cortini
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cleaned input keywords passed to pystarcode.starcode
Ruggero Cortini
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updated test.py
Ruggero Cortini
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Commits on Jun 15, 2018

draft output for different algorithms
Ruggero Cortini
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Commits on Jun 18, 2018

moved source files of pystarcode
Ruggero Cortini
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updated test.py with example sequence file
Ruggero Cortini
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updated sources and setup.py
Ruggero Cortini
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Commits on Jun 25, 2018

set input_flag = 1 in the case where input file is not specified with -i
Ruggero Cortini
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Commits on Jun 28, 2018

fixed output type setting
Ruggero Cortini
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fixed 'read_file' calls in test_starcode
Ruggero Cortini
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Commits on Jun 29, 2018