Add Type Cast transform, to convert attribute types
Text Size can now be used as a visualisation channel
Text Colour can now be used as a visualisation channel
Add Shared Text visualisation channel, enabling the textual annotation of groups of nodes

Attributes

Add facility to edit the type and description of user defined attributes
Warnings are now shown regarding duplicate values when importing attributes

Correlation

Add Find Rows of Interest functionality, identifying rows that correlate with selected columns
Add ability to fix correlation plot sort order when Data Value sort is in force
Add Save As Images By… → Row option to output an image for each selected table row
Add functionality to import column annotations onto an existing correlation plot
High resolution rendering of the correlation plot on high DPI displays
Add antilog functionality to correlation plot
Enable log and antilog correlation scaling methods in situations where they were previously unavailable
Add Softmax data normalisation method to correlation loader
Warnings are now shown regarding duplicate values when importing column annotations

Miscellaneous

WebAssembly support
Add option to load an external node layout using the same file format as produced by the export option
A command line headless mode is now available that enables the creation of .graphia files without manually needing to select parameters in the UI; useful for batch processing on servers
Add Crop To Selection option to the attribute data table, which synchronises the node selection with the current table row selection
Add View → Show Edges option, which allows for disabling the rendering of edges entirely
Text size can now be altered on-the-fly in the Layout Settings panel
Double clicking the background in overview mode now resets the view
Ease restrictions on zooming in overview mode
Add Focus Selection option to Table menu, which will focus the nodes corresponding to the current table row selection
Add Auto Focus option, which does the same as the above, except automatically whenever the row selection is changed
Better handling of operating system UI theming, including Dark Mode on platforms that support it
Default sort order for Find By Attribute Value is now lexographical

Bug Fixes

When exporting node positions, export the non-scaled values
Fix various table row selection issues
Reset UI state when switching from Find By Attribute Value to normal Find
Fix Copy Column To Clipboard copying the wrong data after a sequence of selection changes
Fix crash when removing an attribute
Fix keyboard interaction with attribute list UI
Fix correlation plot context menu state inconsistencies
Fix Save As Images By… misbehaving with respect to file names with multiple dots in them
Fix various subtle renderer transition bugs, particularly when several transitions are started/interrupted in rapid succession
Fix handling of some load failure modes
Fix crash involving attribute selection UI component
Fix rendering of fonts with overlapping strokes (most obvious on MacOS)
Fix font selection not operating correctly in some circumstances
Fix last row of attribute table being obscured by horizontal scroll bar
Fix some visual options not being immediately applied
Fix crash when trying to load single column correlation data tables
Fix re-enabling a visualisation with a lost attribute causing errors
Fix operation of context sensitive menu items on MacOS
Fix locked transforms displaying 'nan' for drop down list parameters
Fix potential crash in correlation annotation rendering
Fix editing of attributes not undoing correctly
Fix custom visualisation mapping controls being available when attribute has no range

Other

General improvement to operation on high DPI displays, particularly with fractional scaling factors as seen on Windows
Improve node attribute table performance when node selection changes
Selection outlines of transparent graph elements are now rendered transparent too
Update to Qt 6.7.0

Assets 6

12 Sep 12:00

github-actions

4.2

857082d

Release 4.2

4.2

Bug Fixes

Fix node selection not being reflected in correlation plot

Assets 5

09 Aug 10:46

github-actions

4.1

770b8de

Release 4.1

4.1

Bug Fixes

Fix clustering algorithms labelling clusters in an arbitrary order when they happened to be the same size
Fix crashes and data corruption related to favourite transforms
Fix crash that occurred when cancelling a load at a particular point
Fix crash that occurred when removing a table column
Restore attribute selection keyboard based interface from 3.x
Fix instances where the context menus on some UI elements would get out of sync with respect to their main menu equivalents
Fix visualisation descriptions not appearing in the visualisation creation dialog
Fix various issues with filenames when saving plot images
Fix crash that occurred on MacOS when exiting
Fix various assorted issues with the data table

Assets 5

24 Apr 10:44

github-actions

4.0

623cbca

Release 4.0

4.0

Loading

When there is a choice of file type or plugin to use, said choice can be set as a default, avoiding future prompts
The file type selector of the file open dialog is now used to guide file type and plugin selection
The pairwise file loader now has a front end that allows for the configuration of columns within the source data table, so it's no longer necessary for pairwise files to be strictly 2 or 3 columns

Transforms and Visualisations

Add facility to select favourite transforms, which are displayed at the top of the transform list
Add mechanism to save sets of transforms and visualisations for later recall

Attributes

There is now an option (on the Misc tab of the Options dialog) to change the way Find By Attribute Value sorts the list of possible attribute values; it can now be done alphanumerically, in addition to the normal behaviour of sorting from the large to small set size

Correlation

The correlation plot columns can now be sorted by data value
The correlation plot is now vertically scrollable when it's too large for its container - i.e. when there are many column annotations
In the correlation loader, input data can now be clipped against a constant, or by Winsorization
Correlation plot columns can now be sorted by hierarchical clustering, using the SLINK method with a Euclidean distance measure
Add a Filtering option to correlation parameters, more specifically enabling the ability to filter edges using the k-Nearest Neighbours strategy; this is particularly useful with datasets that are extremely correlated, where traditional thresholding cannot adequately differentiate between rows
Replace the Initial Transforms section of the correlation loader with Template, allowing for a more flexible and customisable means of appending additional transforms and visualisations
Add ability to save correlation plot images on a per attribute value basis, e.g. saving one image per cluster

Miscellaneous

In plugins that have a data table, the source, target and neighbour rows can now be selected
Graph metrics display now reflects the visible component, when in component mode
Add option to interpret trackpad pan gestures as zooming; this is primarily useful for users of the Apple Magic Mouse, where it's more intuitive for scrolling vertically to map to zooming

Bug Fixes

Bring MCL inline with the reference implementation by not skipping single node clusters
Fix pairwise exporter introducing extra quotes into its output
Fix crash that occurred when changing the graph with the Find interface active
Prevent showing the main context menu over the Find interface
Fix delay in showing Find By Attribute interface when an attribute has a large quantity of values
Fix deadlock/crash when cancelling a command
Fix initial dimensions on screenshot capture preset often being wrong
Fix renderer not updating when focused labelling enabled
Use the correct file extension when saving a non-native format
Fix correlation plot data value sorting occasionally behaving oddly when node selection changes
Fix changes to transform flags (locked, pinned) not being properly undoable
Fix blank graph rendering in some rare circumstances
Fix potential crash that might occur when changing the find attribute multiple times
Fix graph size estimate plot inappropriately showing "Empty Graph" in some circumstances
Fix poor behaviour when loading correlation data with anonymous columns
Fix "ghost" node selection box appearing after an unusual combination of mouse drags and key presses
Fix temporary lock-up at the end of a transform application
Fix visually overlapping components when nodes move from one component to another
Fix crash when reloading certain save files where nodes have been manually deleted

Other

Move code base to Qt 6/Qt Quick 2 (Please report bugs/regressions)
macOS builds now take advantage of Apple M1 hardware
Capture more debug output on Windows
Improve video driver crash detection
Collect more information when a std::exception based crash occurs
Improve macOS update script to deal with the case where the target .app has been renamed
Improve installer error message on macOS when target directory is not writeable
Allow selection of alternative UI themes where available

Assets 5

22 Nov 18:44

github-actions

3.2

91484c3

Release 3.2

Bug Fixes

Improve stability across all platforms, particularly with respect to the use of enrichment analysis
Fix operation of Copy Column To Clipboard functionality

Linux

Improve compatibility across a greater number of distributions

Assets 5

Releases: graphia-app/graphia

Release 5.5

Bug Fixes

Uh oh!

Release 5.4

Bug Fixes

Other

Uh oh!

Release 5.3

Uh oh!

Release 5.2

5.2

Bug Fixes

Uh oh!

Release 5.1

5.1

Bug Fixes

Uh oh!

Release 5.0

5.0

Loading

Transforms and Visualisations

Attributes

Correlation

Miscellaneous

Bug Fixes

Other

Uh oh!

Release 4.2

4.2

Bug Fixes

Uh oh!

Release 4.1

4.1

Bug Fixes

Uh oh!

Release 4.0

4.0

Loading

Transforms and Visualisations

Attributes

Correlation

Miscellaneous

Bug Fixes

Other

Uh oh!

Release 3.2

Bug Fixes

Linux

Uh oh!