feat: add REF/ALT alignment utility for visualization (Issue #23) #30
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…eepmind#23) This adds a new utility function align_ref_alt_tracks to alphagenome.visualization. It handles the coordinate misalignment that occurs when plotting long indels by mapping ALT tracks to the REF coordinate system. Deletions are represented as NaNs and insertions are compressed, ensuring visual alignment in OverlaidTracks.
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This adds a new utility function align_ref_alt_tracks to alphagenome.visualization. It handles the coordinate misalignment that occurs when plotting long indels by mapping ALT tracks to the REF coordinate system. Deletions are represented as NaNs and insertions are compressed, ensuring visual alignment in OverlaidTracks.