Randomly shuffles the locations of genes in a GTF annotation, maintaining relative positions of exons and transcripts. Input is STDIN, output is STDOUT. Important1: Need to specify the BEDTools "Genome File" within the script, being the lengths of each chromosome in the assembly you're using: chr1 197195432 chr2 181748087 chr3 159599783 chr4 155630120 chr5 152537259... Important2: Script requires BEDTools to be installed.
gold-lab/shuffle_gtf
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