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3. Plugin manager
GDelevoye edited this page Nov 13, 2022
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To help you with the compilation toolchain, the companion-tool "cigarfilter_config" is installed with cigarfilter.
We have already seen how you can use it to add a new plugin :
cigarfilter_config add [your_implementation.cpp] [your_filter_name] You can also list all available plugins. Several examples are installed by default :
user@computer:$ cigarfilter_config list
default
example1
example2
example3
example4
example5
iterate_groups
print_stdoutYou can remove one plugin in particular :
cigarfilter_config remove [your_filter_name] You can also clean the cache :
cigarfilter_config cleanThis can be useful if you encountered compilation issues, if the process was interrupted in a way that corrupted the data, etc.
You can purge the data (tmp files + all compiled models except the default one)
cigarfilter_config purge
cigarfilter : A fast C++ tool to filter .bam files by CIGAR strings
Quick start |
Tutorial / Examples