An R library to normalize Agilent one color microarray data.
Includes functions for:
- parsing Agilent headers
- reading expression, copy number or arrayCGH data
- reading data into an expression set
- reading Agilent or GPR scanned arrays
- background correction
- normalization
- average duplicated spots
The latest version of the library can be installed form the R session doing:
install.packages ("devtools")
library (devtools)
setRepositories (ind=1:2)
install_github ("genometra/agilent/pkg")