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ODM-12958: data classes change #520

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Merged
marijan-mihaljev merged 3 commits into from
Dec 30, 2025
Merged

ODM-12958: data classes change #520

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23b554a
ODM-12958: data classes change
marijan-mihaljev Dec 26, 2025
b29533d
ODM-12958: added missing name part for Genetic screens
marijan-mihaljev Dec 29, 2025
f50f43c
ODM-12958: removed trailing space
marijan-mihaljev Dec 29, 2025
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8 changes: 6 additions & 2 deletions openapi/v1/job.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -641,7 +641,9 @@ paths:
pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single-cell proteomics`, `Metabolomics`,
`Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`,
`Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body
fluid counts`, `Nanopore`, `Flow Cytometry (FCS)`, `Document`, `Other`.
fluid counts`, `Long-read sequencing (Nanopore, PacBio)`, `Flow Cytometry (FCS)`,
`Spatial transcriptomics`, `Phenomics`, `Copy number alterations`, `Microbiome / Metagenomics',
`Immune repertoire`, `Genetic screens (CRISPR / RNAi)`, `Cell imaging`, `Document`, `Other`.

When job finishes successfully the following **result** object can be obtained using `GET /job/{id}/output` request:

Expand Down Expand Up @@ -686,7 +688,9 @@ paths:
pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single-cell proteomics`, `Metabolomics`,
`Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`,
`Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body
fluid counts`, `Nanopore`, `Flow Cytometry (FCS)`, `Document`, `Other`.
fluid counts`, `Long-read sequencing (Nanopore, PacBio)`, `Flow Cytometry (FCS)`,
`Spatial transcriptomics`, `Phenomics`, `Copy number alterations`, `Microbiome / Metagenomics',
`Immune repertoire`, `Genetic screens (CRISPR / RNAi)`, `Cell imaging`, `Document`, `Other`.

When job finishes successfully the following **result** object can be obtained using `GET /job/{id}/output` request:

Expand Down
5 changes: 4 additions & 1 deletion openapi/v1/schemas/job/ImportExpressionSignalRunFromMultipartRequest.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,10 @@ properties:
pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single-cell proteomics`, `Metabolomics`,
`Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`,
`Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body
fluid counts`, `Nanopore`, `Flow Cytometry (FCS)`, `Document`, `Other`. \nIn case the parameter is not set
fluid counts`, `Long-read sequencing (Nanopore, PacBio)`, `Flow Cytometry (FCS)`,
`Spatial transcriptomics`, `Phenomics`, `Copy number alterations`, `Microbiome / Metagenomics`,
`Immune repertoire`, `Genetic screens (CRISPR / RNAi)`, `Cell imaging`,
`Document`, `Other`. \nIn case the parameter is not set
the dataClass is automatically defined as `Other`."
example: Proteomics
type: string
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5 changes: 4 additions & 1 deletion openapi/v1/schemas/job/ImportExpressionSignalRunRequest.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,10 @@ properties:
pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single-cell proteomics`, `Metabolomics`,
`Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`,
`Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body
fluid counts`, `Nanopore`, `Flow Cytometry (FCS)`, `Document`, `Other`. \nIn case the parameter is not set
fluid counts`, `Long-read sequencing (Nanopore, PacBio)`, `Flow Cytometry (FCS)`,
`Spatial transcriptomics`, `Phenomics`, `Copy number alterations`,
`Microbiome / Metagenomics`, `Immune repertoire`, `Genetic screens (CRISPR / RNAi)`, `Cell imaging`,
`Document`, `Other`. \nIn case the parameter is not set
the dataClass is automatically defined as `Other`."
example: Proteomics
type: string
Expand Down
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