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ODM-12866: Add description to manageData.yaml #511

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Merged
natalyatodorova merged 4 commits into from
Jan 6, 2026
Merged

ODM-12866: Add description to manageData.yaml #511

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8c983a6
ODM-12866: Add description to manageData.yaml
LeonaNedeljkovic Dec 3, 2025
f98dc5b
Merge branch 'develop' into feature/ODM-12866-delete-exression-group
egor-alexandrov Dec 9, 2025
3a9b3d0
Merge branch 'develop' into feature/ODM-12866-delete-exression-group
natalyatodorova Jan 6, 2026
70282c5
Revert "!![ODM-12925] Try naive fix (#522)"
natalyatodorova Jan 6, 2026
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2 changes: 1 addition & 1 deletion Earthfile
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ r-api-client:
# Gcc and other stuff for R source packages building
RUN \
apt update && \
apt install -y libssl-dev libcurl4-gnutls-dev curl libcurl4t64:amd64=8.18.0~rc2-1 --allow-downgrades && \
apt install -y libssl-dev libcurl4-gnutls-dev curl && \
Rscript requirements.R

COPY +build/generated generated
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1 change: 1 addition & 0 deletions openapi/v1/manageData.yaml
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Expand Up @@ -111,6 +111,7 @@ paths:
* If you delete a `STUDY`, the entire study with all the listed group types and files, will be removed.
* Deleting a `SAMPLE_GROUP` will result in the removal of all samples associated with this sample group, along with any linked `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`/`LIBRARY_GROUP`/`PREPARATION_GROUP`/`CELL_GROUP`. The linked `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`/`CELL_GROUP` will be deleted, even if it is linked to another metadata group.
* Deleting a `LIBRARY_GROUP` or `PREPARATION_GROUP` will result in the removal of all libraries or preparations associated with this group, along with any linked `TABULAR_DATA`/`CELL_GROUP`.
* Deleting a `CELL_GROUP` will result in the removal of linked `TABULAR_DATA` (cell expression group).
* If you delete `TABULAR_DATA`/`GENE_VARIANT`/`FLOW_CYTOMETRY`, all associated data, such as links and runs will be removed from ODM.
* If you delete `REFERENCE_GENOME`, searching for variant by variantFeature (genes) won't be available for linked VCF groups.
* If you delete `FILE`, the file will be removed from ODM.
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