Fixes/remove phased check #13

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Merged

seppinho merged 2 commits into main from fixes/remove-phased-check

Dec 18, 2024

Merged

Fixes/remove phased check #13

remove unused phasing autodetect method

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3 errors and 8 warnings

The provided VCF file is malformed. Error during index creation: Input file is not in valid block compressed format., for input source: /home/runner/work/imputationserver-utils/imputationserver-utils/test-data/data/unorderd/minimac_test.50.vcf.gz

Your upload data contains chromosome 'chr20'. This is not a valid hg19 encoding. Please ensure that your input data is build hg19 and chromosome is encoded as '20'.

No genotypes found in the VCF file. It appears the file contains only the header.

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Skip allele frequency check.

Uploaded data is hg38 and reference is hg19.

Uploaded data is hg19 and reference is hg38.

Skip allele frequency check.

Uploaded data is hg19 and reference is hg38.

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Fixes/remove phased check #13

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Fixes/remove phased check #13

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