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galaxyproject / galaxy-visualizations Public

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Add bamjs BAM file viewer#88

Draft

dannon wants to merge 25 commits intomaingalaxyproject/galaxy-visualizations:mainfrom

bamjsgalaxyproject/galaxy-visualizations:bamjsCopy head branch name to clipboard

Conversation Commits25 (25)Checks Files changed

Draft

Add bamjs BAM file viewer#88
dannon wants to merge 25 commits intomainfrom
bamjs

Commits

Commits on Mar 18, 2026

Fix package naming and yarn references in build scripts
dannon
committed
Remove per-package yarn.lock files
dannon
committed
Migrate from Yarn/Lerna to pnpm workspaces
dannon
committed
Consolidate prettier config to root
dannon
committed
Update test workflow for pnpm
dannon
committed
Add publishing workflows for automatic and manual npm releases
dannon
committed

Commits on Mar 19, 2026

Update README with development setup and publishing docs
dannon
committed
Fix trailing comma in heatmap vite config
dannon
committed
Gitignore test-results and playwright-report directories
dannon
committed
Fix CI: setup pnpm before Node, bump to action-setup v5
dannon
committed
initial pass at bamjs
dannon
committed
Refactoring and cleanup of bamjs
dannon
committed
Work on tests for bamjs
dannon
committed
Simplification, cleanup.
dannon
committed
Bind remaining settings w/ defaults -- we may or may not use these.
dannon
committed
Dump mock; we'll rely on either a dataset or the test, and throw a configuration error when there's no dataset
dannon
committed
Fix bam urls
dannon
committed
This will never work without an index.
dannon
committed
incremental work making this thing read small bams right
dannon
committed
Finally loading when zipped/etc
dannon
committed
Try to more reliably fetch reads, refactor header reading
dannon
committed
Use pako for the small file optimization path where we download the
dannon
committed
use bundle-consolidated css
dannon
committed
Cleanup, ready for integration
dannon
committed
Clean up bamjs for merge: align with repo conventions, remove dead code
dannon
committed

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