SKiRA (single cell killifish RNA atlas) is a comprehensive desktop application serving as a scRNA-seq atlas for African Turquoise Killifish Nothobranchius furzeri, providing a platform to analyze the gene expression, cell types and morphology during embryogenesis (52-115hpf)
- Analyze individual gene expression in UMAP space
- View cell type clusters
- Define custom color schemes for expression
- View the embryonic morphology at each timepoint
- Export high fidelity plots in various formats (SVG, PNG, PDF)
Single cell RNA sequencing collected at 52, 72, 96, 115 hours post fertilization from wild type embryos
Developed at the Abitua Lab at the University of Washington Department of Genome Sciences