Skip to content

Add Rdata manipulation tools#7

Open
Alanamosse wants to merge 9 commits intogalaxyecology:masterfrom
Alanamosse:rdata
Open

Add Rdata manipulation tools#7
Alanamosse wants to merge 9 commits intogalaxyecology:masterfrom
Alanamosse:rdata

Conversation

@Alanamosse
Copy link
Copy Markdown
Contributor

Two new and small tools, useful to manipulate rdata files very common in the ecological community

1- Load and give insight on a rdata file.
2- Extract the wanted attributes

I'm almost certain that the Ecology TS category is not optimal.
Maybe a more data oriented category would be better : "converts format" or "Data source" ?

@yvanlebras
Copy link
Copy Markdown
Contributor

yvanlebras commented Mar 20, 2019

Groovvy baby! Yes, I think we have to put these tools into "Ecology" + "Convert formats" main TS categoies. "Data source" is not relevant I think....
One thing, if I well remember, we can't extract a workflow from hitories where these tools are used... If I well remember because of the <options from_dataset="rdata_attributes"> <column name="value" index="0"/> parameter no ?

@Alanamosse
Copy link
Copy Markdown
Contributor Author

Yes this option can be problematic for workflow.
Also the parser tool 'discovers' created datasets because of the undefined number of outputs, so you can't really define an output you want to use in a workflow.

yvanlebras added a commit that referenced this pull request May 18, 2020
fix flake8 and flake8-import-order problems
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants