FRASER 2.6.1

What's Changed

• Use txdbmaker by @c-mertes in #119

Full Changelog: 2.4.6...2.6.1

FRASER 2.4.6

What's Changed

• ignore theta in mergeExternal for Jaccard metric by @AtaJadidAhari in #111
• Fix annotation of FRASER object by @c-mertes in #114
• Remove data.table from import by @AtaJadidAhari in #117

Full Changelog: 2.4.5...2.4.6

FRASER 2.4.5

Fixes a bug with the split read counting. It matters for unstranded, paired-end data.

FRASER 2.4.3

Fixes a bug with the cache

FRASER 2.4.2

• We are now releasing FRASER 2.4.2 an improved algorithm with respect to FRASER that uses the Intron Jaccard index. This also makes it 2-3 times faster and lighter!
• In addition, instead of doing a grid search to determine the optimal encoding dimension of the denoising autoencoder, we now use the Optimal Hard Threshold (OHT). This makes the algorithm 6-10 times faster!
• Note that since this version, FRASER is not for commercial use

bioRxiv submission

Version used to create all results in the bioRxiv paper

This tag was created for completeness, but should not be used anymore.

FRASER 1.99.4

• Fixed drop parameter in generic [ function and other small bug fixes #62
• Implemented sample specific counting regarding strandSpecific parameter #72 and #76
• Fix error when intron not on same chr as any genes in the txdb #75
• Small updates in the documentation #58

FRASER 1.99.3

• Vignette updates by @ischeller in #58
• Fix tests by @ischeller in #68
• update BIOC version by @AtaJadidAhari in #69
• fix GHA cache address by @AtaJadidAhari in #71

Full Changelog: 1.99.2...1.99.3

FRASER 1.99.2

• update plot functions to color aberrant status based on pvalues computed on subsets of genes

FRASER 1.99.0

• Move to FRASER 2.0, using the Intron Jaccard Index as its single splice metric
• Supports restriction of FDR correction to specific genes based on prior knowledge
• Several small improvements