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…d LocalDiskStore Add write_samples() convenience function for writing samples to tar files. Add LocalDiskStore for persistent local shard storage at ~/.atdata/data/. Add Index.write() for one-step sample serialization and indexing. Add Index.promote_entry() and promote_dataset() for atmosphere publishing through the unified Index interface. Deprecate standalone promote_to_atmosphere() in favor of Index methods. Export Index and LocalDiskStore from atdata top-level. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Filter out S3-specific kwargs (cache_local) in LocalDiskStore before passing to ShardWriter. Fix mock patch paths in promote_entry test, strengthen assertions, and clean up formatting. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…ode, strengthen assertions - Trim verbose docstrings in _protocols.py and across test suite - Remove dead code: parse_cid function and TestParseCid tests - Strengthen weak test assertions (isinstance → value checks) - Add local filterwarnings for tests exercising deprecated APIs - Update CHANGELOG with adversarial review items (#525-#533) - Regenerate docs (quartodoc + quarto) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Codecov Report❌ Patch coverage is
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…o 94% - _helpers.py: 82% → 100% (object dtype npy fallback, legacy format compat) - _factory.py: 71% → 100% (postgres/postgresql, unknown provider, redis paths) - dataset.py: 96% → 98% (DictSample edges, chained filter/map, wrap_batch error) - _index.py: 90% → 94% (atmosphere routing, type validation, schema record) - testing.py: 85% → 90% (list/optional/unknown field types in make_samples) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…nd review Adds .claude/commands/ with three project-specific skills: - /release: guided release workflow (branch, version bump, changelog, PR) - /changelog: generate changelog entries from recent commits - /adr: adversarial review skill with project-specific heuristics Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…nt codebase - Restructure .planning/ from flat setup/roadmap into temporal phases: 01-atproto-foundation, 02-v0.2-review, 03-v0.3-roadmap - Update CLAUDE.md to reflect v0.3 architecture: ATProto integration, pluggable providers, HuggingFace-style API, benchmark commands, local/ package split, manifest system, and CLI module Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…ark jobs Update runs-on for all three CI jobs to include the self-hosted forecast-ci-linux-x64 label alongside ubuntu-latest. Also adds changelog entry for ruff lint fix (#549). Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
…section The previous runs-on list required runners matching ALL labels, not either one. Use the self-hosted runner label directly. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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We're deciding to migrate to forecast-bio for this repo, so closing this PR. |
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Summary
LocalDiskStore— local filesystem data store implementingAbstractDataStorewrite_samples()— module-level function to write samples to WebDataset tar filesIndex.write()— write samples + index in one callIndex.promote_entry()/Index.promote_dataset()— atmosphere promotion via Indexatdata.Index,atdata.LocalDiskStore,atdata.write_samplesTest plan
uv run pytest tests/ -x— 1155 passed, 33 skippeduv run ruff check src/ tests/— cleanuv run ruff format --check src/ tests/— clean🤖 Generated with Claude Code