Skip to content

feat: Add configurable MEMORY parameter to Makefile #127

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
mcrocker-bioborg wants to merge 1 commit into
base: main
Choose a base branch
from
Open

feat: Add configurable MEMORY parameter to Makefile #127

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 5 additions & 1 deletion Makefile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,9 @@ in_dir = test/samples
out_dir = test/build
fa_dir = test/fasta

# Configurable parameters
MEMORY ?= 32GB

# Form Bio workflow deployment
formbio_org := form-bio-solutions
formbio_project := aav-qc-workshop
Expand Down Expand Up @@ -42,9 +45,10 @@ formbio: clean


# Test Nextflow pipeline execution
# Usage: make sc [MEMORY=8GB] # Default: 32GB

sc ss min folder: %: params-local-%.json
nextflow run -profile local main.nf -params-file $<
nextflow run -profile local main.nf -params-file $< --memory '$(MEMORY)'

# Test local execution and outputs

Expand Down
Loading