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Merged
csoneson merged 3 commits into from
Nov 5, 2025
+12 −12
Merged

Bioc322 #2

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9fcb4ee
Bump version
csoneson Nov 5, 2025
acdddd2
Adapt to pyenv-based basilisk (Bioc 3.22)
csoneson Nov 5, 2025
688436a
Temporarily set Bioc version explicitly
csoneson Nov 5, 2025
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6 changes: 3 additions & 3 deletions .github/workflows/R-CMD-check.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,9 +20,9 @@ jobs:
fail-fast: false
matrix:
config:
- { os: windows-latest, bioc: 'release'}
- { os: macOS-latest, bioc: 'release', curlConfigPath: '/usr/bin/'}
- { os: ubuntu-latest, bioc: 'release'}
- { os: windows-latest, bioc: '3.22'}
- { os: macOS-latest, bioc: '3.22', curlConfigPath: '/usr/bin/'}
- { os: ubuntu-latest, bioc: '3.22'}
#- { os: ubuntu-latest, image: 'bioconductor/bioconductor_docker:devel'}

env:
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6 changes: 3 additions & 3 deletions DESCRIPTION
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@@ -1,8 +1,8 @@
Package: ezzarr
Type: Package
Title: Set up conda environment for ez-zarr
Version: 0.1.8
Date: 2025-09-24
Version: 0.1.9
Date: 2025-11-05
Authors@R: c(
person("Charlotte", "Soneson", email = "charlottesoneson@gmail.com",
role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3833-2169")),
Expand All @@ -17,7 +17,7 @@ Description: Provides basic functionality for creating and accessing a conda
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
RoxygenNote: 7.3.3
StagedInstall: no
Imports:
basilisk,
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4 changes: 4 additions & 0 deletions NEWS.md
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@@ -1,3 +1,7 @@
# ezzarr 0.1.9

* Adapt to pyenv-based basilisk

# ezzarr 0.1.8

* Update ez-zarr to v0.4.2
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8 changes: 2 additions & 6 deletions R/basilisk.R
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@@ -1,16 +1,12 @@
#' @importFrom basilisk BasiliskEnvironment

.conda_dependencies <- c(
"python==3.12"
)
.pip_dependencies <- c(
"python==3.12",
"ez_zarr==0.4.2"
)

ezzarrenv <- BasiliskEnvironment(
envname = "ezzarr", pkgname = "ezzarr",
packages = .conda_dependencies,
channels = c("conda-forge"),
pip = .pip_dependencies
packages = .pip_dependencies
)

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