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FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

16 followers
Switzerland

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fmi-ij2-plugins fmi-ij2-plugins Public

A collection of ImageJ2 plugins for use with KNIME

Java 8 3
visiview-scripts visiview-scripts Public

A collection of macros for the VisiView acquisition software

Python 1 1
imagej-scripts imagej-scripts Public

Python 1

Repositories

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Showing 10 of 68 repositories

faim-ipa Public
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

fmi-faim/faim-ipa’s past year of commit activity

Python 18 BSD-3-Clause 8 20 1 Updated Dec 16, 2025
napari-save-transformed Public
Save image layers with their transformation applied

fmi-faim/napari-save-transformed’s past year of commit activity

Python 3 BSD-3-Clause 0 2 1 Updated Dec 15, 2025
faim-tablespy Public

fmi-faim/faim-tablespy’s past year of commit activity

Python 0 0 0 0 Updated Dec 12, 2025
staged-recipes Public Forked from conda-forge/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks

fmi-faim/staged-recipes’s past year of commit activity

Python 0 BSD-3-Clause 5,660 0 0 Updated Dec 9, 2025
pixi-psf Public
Pixi project to run napari-psf-analysis

fmi-faim/pixi-psf’s past year of commit activity

0 0 0 0 Updated Dec 8, 2025
bioio-base-feedstock Public Forked from conda-forge/bioio-base-feedstock
A conda-smithy repository for bioio-base.

fmi-faim/bioio-base-feedstock’s past year of commit activity

0 BSD-3-Clause 3 0 0 Updated Dec 5, 2025
pixi-assistant Public
Helper CLI to check local system settings to work with pixi projects

fmi-faim/pixi-assistant’s past year of commit activity

Rust 1 MIT 0 1 0 Updated Dec 5, 2025
faim-wako-searchfirst Public
Python scripts for the SearchFirst option in Wako Software Suite

fmi-faim/faim-wako-searchfirst’s past year of commit activity

Python 2 MIT 1 8 3 Updated Dec 2, 2025
metamorph-mda-parser Public
Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

fmi-faim/metamorph-mda-parser’s past year of commit activity

Python 0 BSD-3-Clause 0 3 0 Updated Dec 2, 2025
cellvoyager-types Public
Pydantic models for CellVoyager CV7000/CV8000 metadata

fmi-faim/cellvoyager-types’s past year of commit activity

Python 1 BSD-3-Clause 2 1 1 Updated Dec 2, 2025

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