Cell Representation Learning

This project was created for the Computer Vision course at University Cologne.

Directory structure

/experiments: Code that does not belong to the pipeline but was used to experiment with the dataset and different concepts

/plots: Example images and plots of the dimensionality reduced embeddings with their labels or clustering algorithms applied

/video_lists: .json files containing different video lists used in training

Used Technologies

• Python 3.11.5
• torch (cuda 12.6)
• requirements from requirements.txt (install with pip install -r requirements.txt)

Contributors

Catharina Dümmen, Florian Bremm

License

For academic use only. Not licensed for commercial reuse.

Execute Pipeline

Execute the preprocessing.py Notebook

python training.py {training_name} {gpu number} {path to video list}

python clustering.py