Take in multiple inputs with different assemblies; pull chr info from bam instead of fasta#44

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minkinaa wants to merge 6 commits intomainfrom

Commits on Jun 18, 2025

drop filtering from mosdepth, allow it to only be done by the input user controlled input filtering
Mitchell R. Vollger
committed

Commits on Oct 28, 2025

Allow multiple inputs with different reference files and get chr names from input bam instead of fasta
minkinaa
committed

Commits on Oct 29, 2025

Commits on Nov 10, 2025

removed dependence on .fai for chr names where bam already present and removed commented unused code
minkinaa
committed
added error message to get_fai
minkinaa
committed