feat: support Snakemake SQLite DB persistence backend #51
Codecov / codecov/project
succeeded
Mar 28, 2026 in 0s
88.59% (+0.11%) compared to b0e3a49
View this Pull Request on Codecov
88.59% (+0.11%) compared to b0e3a49
Details
Codecov Report
❌ Patch coverage is 88.25911% with 29 lines in your changes missing coverage. Please review.
✅ Project coverage is 88.59%. Comparing base (b0e3a49) to head (3cce606).
| Files with missing lines | Patch % | Lines |
|---|---|---|
| snakesee/persistence/fs.py | 82.14% | 10 Missing |
| snakesee/parser/core.py | 76.00% | 6 Missing |
| snakesee/persistence/db.py | 94.39% | 6 Missing |
| snakesee/persistence/backend.py | 84.37% | 5 Missing |
| snakesee/estimation/data_loader.py | 87.50% | 1 Missing |
| snakesee/estimation/estimator.py | 80.00% | 1 Missing |
Additional details and impacted files
@@ Coverage Diff @@
## main #51 +/- ##
==========================================
+ Coverage 88.47% 88.59% +0.11%
==========================================
Files 48 52 +4
Lines 4684 4926 +242
==========================================
+ Hits 4144 4364 +220
- Misses 540 562 +22 | Files with missing lines | Coverage Δ | |
|---|---|---|
| snakesee/parser/metadata.py | 96.20% <100.00%> (+8.86%) |
⬆️ |
| snakesee/persistence/__init__.py | 100.00% <100.00%> (ø) |
|
| snakesee/state/paths.py | 97.74% <100.00%> (+0.09%) |
⬆️ |
| snakesee/estimation/data_loader.py | 86.56% <87.50%> (-0.10%) |
⬇️ |
| snakesee/estimation/estimator.py | 88.61% <80.00%> (-0.16%) |
⬇️ |
| snakesee/persistence/backend.py | 84.37% <84.37%> (ø) |
|
| snakesee/parser/core.py | 82.44% <76.00%> (-0.40%) |
⬇️ |
| snakesee/persistence/db.py | 94.39% <94.39%> (ø) |
|
| snakesee/persistence/fs.py | 82.14% <82.14%> (ø) |
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