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Simplify sequence check #2

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Simplify sequence check #2

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2 changes: 1 addition & 1 deletion indel_prediction/predictor/predict.py
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Original file line number Diff line number Diff line change
Expand Up @@ -82,7 +82,7 @@ def plot_predictions(theta_file, target_seq, pam_idx):
if pam_idx < 0 or pam_idx >= (len(target_seq)-3):
raise Exception('PAM idx out of range')

if sum([x in ['A','T','G','C'] for x in target_seq]) != len(target_seq):
if set(target_seq) - set("ATGC"):
raise Exception('Sequence must be composed of A,T,G,or C only')

if len(target_seq) < 20 or pam_idx < 13 or pam_idx > len(target_seq)-7:
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