clasim is a python module that allows to simulate continuous labeling assays.
In the example folder are the script to create the plots from the paper and an simple fit example. The module was developed with python3. It may run in python2...
Install by running
python setup.py installYou will need the gsl development package.
To install gsl dependencies run:
apt-get install gsl-bin libgsl0-devdnf install gsl-develRode, Julian, Torsten Goerke, Lutz Brusch, and Fabian Rost. “How Fast Are Cells Dividing: Probabilistic Model of Continuous Labeling Assays.” bioRxiv, 2019, 550574. https://doi.org/10.1101/550574.