Releases: fairagro/sciwin
Releases · fairagro/sciwin
v1.1.0
09 Dec 07:25
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Release Notes
🚀 Features
create now has --env option to load in an .env filemade inputs and outputs prefix optional in connect
🐛 Bugfixes
default values are used on input connections
Fixed some bugs in command parsing (s4n create, fixes for python modules)
Better alignment with CWL spec in some points (e.g. glob)
🚜 Refactor
Major restructuring for better maintainability
Install s4n 1.1.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v1.1.0/s4n-installer.ps1 | iex" Download s4n 1.1.0
v1.0.0
24 Sep 09:44
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Release Notes
🚀 Features
The commands have changed in v1.0.0 (Breaking Change ). The mapping is as follows:
Old Command
New Command
s4n tool create
s4n create
s4n tool list
s4n list
s4n tool remove
s4n remove
s4n workflow create
s4n create --name (optional!)
s4n workflow list
s4n list
s4n workflow remove
s4n remove
s4n workflow status
s4n list [WORKFLOW_NAME]
s4n workflow connect
s4n connect
s4n workflow disconnect
s4n disconnect
s4n workflow visualize
s4n visualize
s4n workflow save
s4n save
Install s4n 1.0.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v1.0.0/s4n-installer.ps1 | iex" Download s4n 1.0.0
v0.8.0
21 Aug 05:55
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Release Notes
🚀 Features
Support Workflows in git submodules #137
Added s4n install and s4n uninstall commands #138
Runner supports scatter and linkMerge now
Support packed CWL Documents in Runner #144
Use ttl.sh to build Docker images for REANA on the fly (fixes #119 )
🐛 Bugfixes
ramping up runner conformance from 204/378 to 223/378
fixed staging of arrays of files and dirs
fixed staging of iwdr arrays
🚜 Refactor
Code restructuring
Consolidation in REANA specific (De)Serialization code #145
Install s4n 0.8.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.8.0/s4n-installer.ps1 | iex" Download s4n 0.8.0
v0.7.0
22 Jul 13:38
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Release Notes
🚀 Features
Remote Execution using Reana #108
FAIRagro Reana Instance will be provided later, see #42
Credentials stored in keyring #118
Provenance RO-Crate can be created from remote execution 46808af
Possibility to connect all CWL Documents in s4n workflow connect #95
added --mount to s4n tool create to mount directories into working dir #103
added type hints in s4n tool create. Inputs prefixed like s:/mnt/ are then enforced to be of type string.
🐛 Bugfixes
Inputs and Outputs can not have same IDs #113
Install s4n 0.7.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.7.0/s4n-installer.ps1 | iex" Download s4n 0.7.0
v0.6.1
26 May 09:57
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Release Notes
🚀 Features
Added command s4n workflow visualize which accepts a path and either mermaid or dot as renderer outputting diagrams
Install s4n 0.6.1
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.6.1/s4n-installer.ps1 | iex" Download s4n 0.6.1
v0.6.0
21 May 09:31
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Release Notes
🚀 Features
Remote Execution s4n execute remote using REANA (testing) #101 + #108
Added workflow.toml as config format #102
added NetworkAccess Requirement via --net/--enable-network in s4n tool create #104
Support InlineTools in Workflow step #111
Support Expressions, Files and Directories as InitialWorkDirRequirement (in additon to Dirents)
Support Conditional Execution
🐛 Bugfixes
fixed a bug with Dockerfile path resolution
handle NetworkAccess Requirment in runner
inherit parents requirements correclty
ramping up runner conformance from 160/378 to 204/378
Install s4n 0.6.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.6.0/s4n-installer.ps1 | iex" Download s4n 0.6.0
v0.5.2
15 May 13:23
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Release Notes
🐛 Bugfixes
fixed bugs with the tool create -i argument
Install s4n 0.5.2
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.2/s4n-installer.ps1 | iex" Download s4n 0.5.2
v0.5.1
15 May 12:12
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Release Notes
🐛 Bugfixes
fixed serialisation error
Install s4n 0.5.1
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.1/s4n-installer.ps1 | iex" Download s4n 0.5.1
v0.5.0
15 May 09:15
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Release Notes
🚀 Features
Support automatic downloading if files are given with http:// or https:// protocol
Detect URLs as files if given with http:// or https:// protocol
Support Detection of Arrays as inputs in tool create #100
Support ExpressionLibs
🐛 Bugfixes
correctly support DockerRequirement.DockerOutputDirectory#96
made CommandOutputBinding.glob Optional #99
ramping up runner conformance from 131/378 to 160/378
Install s4n 0.5.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.0/s4n-installer.ps1 | iex" Download s4n 0.5.0
v0.4.0
29 Apr 09:54
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Release Notes
🚀 Features
Added --no-defaults flag to tool create which can be handy when using passwords as inputs
🐛 Bugfixes
fixed critical error in tool create where outputEval was set, even when null
🏃CWL Runner
Fixed some bugs in CWL Runner ramping up its conformance from 126/378 to 131/378
Improved Array support in Runner
Support cwl.output.json handling in Runner
Support globs in Runner
Rewrite input ids if "bad words" are found (e.g. sql connection strings)
Install s4n 0.4.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.4.0/s4n-installer.ps1 | iex" Download s4n 0.4.0
