matrix-schema

The collected MATRIX schemas

Website

https://everycure-org.github.io/matrix-schema

Repository Structure

• examples/ - example data
• project/ - project files (do not edit these)
• src/ - source files (edit these)
  • matrix_schema
    • schema -- LinkML schema (edit this)
      • valid_biolink_edge_types.tsv -- Generated table of valid edge types
    • datamodel -- generated Python datamodel
    • utils -- utility scripts for schema generation
• tests/ - Python tests

Developer Documentation

Details

Use the `make` command to generate project artefacts:

• make all: make everything
• make deploy: deploys site
• make gen-valid-edge-type-table: regenerate the valid Biolink edge types table

Release Artifacts

The following artifacts are automatically generated and attached to GitHub releases:

• valid_biolink_edge_types.tsv - A table of valid edge types from the Biolink model with columns for subject_category, predicate, and object_category

Credits

This project was made with linkml-project-cookiecutter.