9 trans preds t #18
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9 trans preds t #18
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this is derived from the original by antoine adde
plus adding a with_tables function
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Pull request overview
This PR implements transition-predictor relationship functionality and performs a significant refactor of the evoland_db class architecture. The main changes extract generic database operations into a new parquet_duckdb base class and add covariance filtering for predictor selection.
Key changes:
- Extract generic parquet/DuckDB operations into new
parquet_duckdbbase class - Implement
create_trans_preds_t()with covariance filtering for predictor selection - Add
covariance_filter()function for two-stage variable selection - Add neighbor analysis capabilities with
neighbors_ttable - Refactor
cast_dt_col()to use type strings instead of functions
Reviewed changes
Copilot reviewed 30 out of 30 changed files in this pull request and generated 3 comments.
Show a summary per file
| File | Description |
|---|---|
| R/parquet_duckdb.R | New base class extracting generic database operations from evoland_db |
| R/evoland_db.R | Refactored to inherit from parquet_duckdb, removing duplicated code |
| R/evoland_db_tables.R | New file organizing table active bindings using R6's $set() |
| R/evoland_db_views.R | Refactored to use R6's $set() for view bindings and add trans_pred_data_v method |
| R/evoland_db_neighbors.R | New neighbor analysis methods for evoland_db |
| R/trans_preds_t.R | Implements create_trans_preds_t with covariance filtering logic |
| R/trans_meta_t.R | Removes id_trans attribution (now handled by DB layer) |
| R/covariance_filter.R | New two-stage covariance filtering implementation |
| R/util.R | Refactors cast_dt_col to use type strings with switch statement |
| R/neighbors_t.R | New table class for neighbor relationships |
| inst/tinytest/test_trans_preds_t.R | Comprehensive integration tests for trans_preds_t |
| inst/tinytest/test_parquet_duckdb.R | Complete test suite for parquet_duckdb base class |
| inst/tinytest/test_evoland_db.R | Updated tests focusing on domain-specific functionality |
| DESCRIPTION | Adds explicit Collate field for source file ordering |
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Pull request overview
Copilot reviewed 38 out of 38 changed files in this pull request and generated 3 comments.
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This will close #9 once done.
This ended up including a big refactor for the
evoland_dbgenerator object, making explicit file collation (sourcing order) necessary.