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Use bioframe inside skgenome

enhancement

skgenome

Status: Open.

#982 In etal/cnvkit;

· etal opened on Feb 1, 2026

Add Cancer GIAB to benchmark suite

enhancement

Status: Open.

#977 In etal/cnvkit;

· etal opened on Jan 27, 2026

Avoiding centromere-bridging segments

enhancement

Status: Open.

#969 In etal/cnvkit;

· ilykos opened on Aug 29, 2025

only using target question

question

Status: Open.

#965 In etal/cnvkit;

· HuZhuocheng opened on Aug 18, 2025

Call with --filter ci question

mystery

Status: Open.

#964 In etal/cnvkit;

· Poly44 opened on Aug 16, 2025

issue with automatic sex detection in cnvkit.py batch: female samples labelled as male

enhancement

question

Status: Open.

#954 In etal/cnvkit;

· eesiribloom opened on Jun 8, 2025

Accept non-integer ploidy as input to 'call'

enhancement

Status: Open.

#953 In etal/cnvkit;

· shashwatsahay opened on Jun 4, 2025

CNVs call with threshold issues

question

Status: Open.

#952 In etal/cnvkit;

· Aimar269 opened on May 14, 2025

Strelka VCF missing GT field causes error during "call" command

bug

Status: Open.

#943 In etal/cnvkit;

· brandon-hastings opened on Jan 29, 2025

segment - ValueError: cannot convert float NaN to integer

question

Status: Open.

#942 In etal/cnvkit;

· pontushojer opened on Jan 24, 2025

Inner cutoffs under calling methods

question

Status: Open.

#939 In etal/cnvkit;

· anasKh79 opened on Jan 20, 2025

Differnece between running batch and each step individually

question

Status: Open.

#935 In etal/cnvkit;

· shashwatsahay opened on Dec 21, 2024