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adding path to the further_reading in runscripts #162

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adding path to the further_reading in runscripts #162

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11 changes: 10 additions & 1 deletion esm_runscripts/compute.py
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Original file line number Diff line number Diff line change
Expand Up @@ -379,14 +379,16 @@ def update_runscript(fromdir, scriptsdir, tfile, gconfig, file_type):
"""

# if `tfile` contains a full path of the runscript then remove the leading path
tfile = os.path.basename(tfile)
if not file_type == "additional file":
tfile = os.path.basename(tfile)

# If the target file in ``scriptsdir`` does not exist, then copy the file
# to the target.
if not os.path.isfile(scriptsdir + "/" + tfile):
oldscript = fromdir + "/" + tfile
print(oldscript)
shutil.copy2(oldscript, scriptsdir)

# If the target path exists compare the two scripts
else:
import difflib
Expand Down Expand Up @@ -612,6 +614,13 @@ def _copy_preliminary_files_from_experiment_to_thisrun(config):
shutil.copy2("./" + this_script, config["general"]["thisrun_scripts_dir"])

for additional_file in config["general"]["additional_files"]:
# if the file is found in the current directory, then copy it. If it has
# a prefix, eg.
# further_reading:
# output/fesom_output.yaml
# then trim the prefix directory, because probably it is already here
if not os.path.isfile(additional_file):
additional_file = os.path.basename(additional_file)
shutil.copy2(additional_file, config["general"]["thisrun_scripts_dir"])
return config

Expand Down